BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0335100 Os03g0335100|AK107094
(326 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0335100 Conserved hypothetical protein 380 e-106
Os01g0762700 203 1e-52
Os03g0333500 163 1e-40
Os02g0785750 133 2e-31
Os03g0659400 Zinc finger, CCHC-type domain containing protein 119 3e-27
Os10g0431000 Similar to DNA-binding protein-like 112 4e-25
>Os03g0335100 Conserved hypothetical protein
Length = 326
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/307 (65%), Positives = 200/307 (65%)
Query: 20 EVDDEEKAISAVIDAAQLKWEAPTSQGGHCYXXXXXXXXXXXXXXYVCHRCRVPGHFIQH 79
EVDDEEKAISAVIDAAQLKWEAPTSQGGHCY YVCHRCRVPGHFIQH
Sbjct: 20 EVDDEEKAISAVIDAAQLKWEAPTSQGGHCYGHRGAHAGRAPPAGYVCHRCRVPGHFIQH 79
Query: 80 CPTNGDPRFDIPRVXXXXXXXXXXXXXXXXXXVIPAELYCKICRNVMANAVLASKCCFDS 139
CPTNGDPRFDIPRV VIPAELYCKICRNVMANAVLASKCCFDS
Sbjct: 80 CPTNGDPRFDIPRVAPTPASSPAPAESGESGGVIPAELYCKICRNVMANAVLASKCCFDS 139
Query: 140 FCDRCIRDHIAAKSRCACGAQARAGDLIPXXXXXXXXXXXXXXXXXXXXXXXXXXDKTRX 199
FCDRCIRDHIAAKSRCACGAQARAGDLIP DKTR
Sbjct: 140 FCDRCIRDHIAAKSRCACGAQARAGDLIPNTTLRTTIANLLATTTGAAASASSGTDKTRS 199
Query: 200 XXXXXXXXXXXXXXXXXXXXXXXNVSSKKSATISSGVLGPRKAREMVVPGDHSAQSGALA 259
NVSSKKSATISSGVLGPRKAREMVVPGDHSAQSGALA
Sbjct: 200 SAGSNAPQPAAPQSPAASQASRSNVSSKKSATISSGVLGPRKAREMVVPGDHSAQSGALA 259
Query: 260 VDGDRHGSYGFPFGPAPGYVDPFFAVGVPFXXXXXXXXXXXXXXXXXXXXXXXXXEDRRD 319
VDGDRHGSYGFPFGPAPGYVDPFFAVGVPF EDRRD
Sbjct: 260 VDGDRHGSYGFPFGPAPGYVDPFFAVGVPFGADPYMYYGGAPYGCGGAAYGYYGGEDRRD 319
Query: 320 TKRTRLR 326
TKRTRLR
Sbjct: 320 TKRTRLR 326
>Os01g0762700
Length = 225
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/211 (56%), Positives = 123/211 (58%), Gaps = 4/211 (1%)
Query: 116 ELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAKSRCACGAQARAGDLIPXXXXXXX 175
ELYCKICRNVMA+AVLASKCCFDSFCD CIRDHIAAKS+CACGAQA DLIP
Sbjct: 19 ELYCKICRNVMADAVLASKCCFDSFCDWCIRDHIAAKSKCACGAQACVDDLIPNPTLRTT 78
Query: 176 XXXXXXXXXXXXXXXXXXXDKTRXXXXXXXXXXXXXXXXXXXXXXXXNVSSKKSATISSG 235
+K R NVSSKKSATISSG
Sbjct: 79 IANVLATTSGTASVSSGT-EKPRSSASSNATEAAPQSLAASQVSRS-NVSSKKSATISSG 136
Query: 236 VLGPRKAREMVVPGDHSAQSGALAVDGDRHGSYGFPFGPAPGYVDPFFAVGVPFXXXXXX 295
VLGPRKA E V GDHS + GALAVDGD HGSYGFPFGPAPGYVDPFF VGVPF
Sbjct: 137 VLGPRKAWETVA-GDHSTEYGALAVDGDHHGSYGFPFGPAPGYVDPFFGVGVPF-GADPY 194
Query: 296 XXXXXXXXXXXXXXXXXXXEDRRDTKRTRLR 326
EDRRDTKRTRLR
Sbjct: 195 MYYGVPYGCCGAAYGYYGDEDRRDTKRTRLR 225
>Os03g0333500
Length = 311
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 116/228 (50%), Gaps = 18/228 (7%)
Query: 112 VIPAELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAKSRCACGAQARAGDLIPXXX 171
VIPAELYCKICRNVMA+AV+ SKCCFDSFCD CIRDHIA+KS+CACGAQARA DLIP
Sbjct: 81 VIPAELYCKICRNVMADAVVTSKCCFDSFCDGCIRDHIASKSKCACGAQARADDLIPNTT 140
Query: 172 XXXXXXXXXXXXXXXXXXXXXXXDKTRXXXXXXXXX-XXXXXXXXXXXXXXXNVS----- 225
DKTR NVS
Sbjct: 141 LRTTIANLLATTTGAAASASSGTDKTRSSAGSNAAHPAAPLSPAASQASRSSNVSSEKAE 200
Query: 226 --------SKKSATISSGVLGPRKAREMVVPGDHSAQSGALAVDGDRHGSYGFPFGPAPG 277
SKK ATI SG LGPRKA+E V GDHSA+SGA AV G H YG PF PA G
Sbjct: 201 HSDGGASTSKKIATI-SGALGPRKAQETVA-GDHSAESGARAVHGGDH--YGVPFCPATG 256
Query: 278 YVDPFFAVGVPFXXXXXXXXXXXXXXXXXXXXXXXXXEDRRDTKRTRL 325
YVDPFF G+PF E+ RD KR R+
Sbjct: 257 YVDPFFFGGMPFGADPYMYYGGVPYGCGGAPNGYYGGEELRDRKRARV 304
>Os02g0785750
Length = 158
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 147 DHIAAKSRCACGAQARAGDLIPXXXXXXXXXXXXXXXXXXXXXXXXXXDKTRXXXXXXXX 206
DHIAAKS+CACGAQARA DLIP +K R
Sbjct: 5 DHIAAKSKCACGAQARANDLIPNPTLRTTIANVLAITGGAASASSGT-EKPRSSVGSNAA 63
Query: 207 XXXXXXXXXXXXXXXXNVSSKKSATISSGVLGPRKAREMVVPGDHSAQSGALAVDGDRHG 266
NVSSKKSATISSGVL PRKARE V GD SA+ GALAVDGD HG
Sbjct: 64 EVAPQSPAASQASHS-NVSSKKSATISSGVLEPRKARETVA-GDQSAEYGALAVDGDHHG 121
Query: 267 SYGFPFGPAPGYVDPFFAVGVPF 289
SYGFPFG APGYVDPFF VGVPF
Sbjct: 122 SYGFPFGLAPGYVDPFFGVGVPF 144
>Os03g0659400 Zinc finger, CCHC-type domain containing protein
Length = 697
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 95/194 (48%), Gaps = 45/194 (23%)
Query: 20 EVDDEEKAISAVIDAAQLKWEAPTSQGGHC------------------------------ 49
EV DE+ AI+++IDAA+LKWE S+ G
Sbjct: 123 EVQDEDAAIASIIDAAELKWEDKPSKRGQTGGRFTSGRYGHGPVEGETPPPGYVCRSCGV 182
Query: 50 ---YXXXXXXXXXXXXXXYVCHRCRVPGHFIQHCPTNGDPRFD--------IPRVXX--- 95
+ YVC+RCR+PGHFI HCPT GDP+FD +P V
Sbjct: 183 PGHFIQHCQQERKTPPSGYVCYRCRIPGHFIHHCPTIGDPKFDDYKKPHTLVPEVSACPI 242
Query: 96 -XXXXXXXXXXXXXXXXVIPAELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAKSR 154
+PAEL+C++C VMA+AVL SKCCFDSFCD+CIRD+I +S+
Sbjct: 243 DGIPSALAPAASVSVVDDLPAELHCRLCNKVMADAVLTSKCCFDSFCDKCIRDYIITQSK 302
Query: 155 CACGAQARAGDLIP 168
C CG + A DLIP
Sbjct: 303 CICGVKVLADDLIP 316
>Os10g0431000 Similar to DNA-binding protein-like
Length = 473
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 69/137 (50%), Gaps = 33/137 (24%)
Query: 65 YVCHRCRVPGHFIQHCPTNGDPRFDIPRVXXXXXXXXXXXXXXXXXXV------------ 112
YVCHRC+VPGHFIQHCPTNGD RFD+ R+
Sbjct: 209 YVCHRCKVPGHFIQHCPTNGDARFDMKRMKPPTGIPKSMLMATPDGSYALPSGAGAVLKP 268
Query: 113 --------------------IPAELYCKICRNVMANAVLASKCCFDSFCDRCIRDHIAAK 152
+P EL C +C+ VM +AVL SKCCF SFCD+CIRD+I K
Sbjct: 269 NEAAFEKEIEGLPTTRSLGDLPPELRCPLCKEVMKDAVLTSKCCFRSFCDKCIRDYIINK 328
Query: 153 SRCACGAQA-RAGDLIP 168
S C CGA + A DL+P
Sbjct: 329 SMCVCGATSILADDLLP 345
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,547,172
Number of extensions: 238291
Number of successful extensions: 1030
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 225
Effective length of database: 11,762,187
Effective search space: 2646492075
Effective search space used: 2646492075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)