BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0332700 Os03g0332700|AK072820
         (311 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0332700  Similar to ABC Transporter, ATP binding component   507   e-144

>Os03g0332700 Similar to ABC Transporter, ATP binding component
          Length = 311

 Score =  507 bits (1306), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 62  PLLEARDLVACVKENGQEILSGVNLTIREGEIHALMGQNGSGKSTLMKVLAGHPEYEVTG 121
           PLLEARDLVACVKENGQEILSGVNLTIREGEIHALMGQNGSGKSTLMKVLAGHPEYEVTG
Sbjct: 62  PLLEARDLVACVKENGQEILSGVNLTIREGEIHALMGQNGSGKSTLMKVLAGHPEYEVTG 121

Query: 122 GTVLFKGENLIDMEPEERSLAGLFMSFQAPVEIPGVNNYDFLLMALNARREKKGLPALEP 181
           GTVLFKGENLIDMEPEERSLAGLFMSFQAPVEIPGVNNYDFLLMALNARREKKGLPALEP
Sbjct: 122 GTVLFKGENLIDMEPEERSLAGLFMSFQAPVEIPGVNNYDFLLMALNARREKKGLPALEP 181

Query: 182 LQVYPIIEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLDEIDSGLD 241
           LQVYPIIEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLDEIDSGLD
Sbjct: 182 LQVYPIIEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLDEIDSGLD 241

Query: 242 VDALEYVAKAVNGILTPNSSLMMITHYQRLLDLIKPSYVHIMEKGKIVKTGDRALANYID 301
           VDALEYVAKAVNGILTPNSSLMMITHYQRLLDLIKPSYVHIMEKGKIVKTGDRALANYID
Sbjct: 242 VDALEYVAKAVNGILTPNSSLMMITHYQRLLDLIKPSYVHIMEKGKIVKTGDRALANYID 301

Query: 302 ESGYKAIATA 311
           ESGYKAIATA
Sbjct: 302 ESGYKAIATA 311



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.136    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,032,983
Number of extensions: 332041
Number of successful extensions: 1314
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1325
Number of HSP's successfully gapped: 5
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)