BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0331900 Os03g0331900|AK099570
         (135 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0331900  Conserved hypothetical protein                      187   3e-48
Os09g0326850  Conserved hypothetical protein                      116   6e-27

>Os03g0331900 Conserved hypothetical protein
          Length = 135

 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 94/113 (83%)

Query: 23  LDAYAPRLPVSFPAGDEWTSPHARLDXXXXXXXRGMFFWPFLEGXXXXXXXXXXXXEDRF 82
           LDAYAPRLPVSFPAGDEWTSPHARLD       RGMFFWPFLEG            EDRF
Sbjct: 23  LDAYAPRLPVSFPAGDEWTSPHARLDPVPPPPPRGMFFWPFLEGLLILANALAILNEDRF 82

Query: 83  LAPRGWSMSEVSGNGRSKSLKGQIVGLIYATQFFRMPLIALNVLIIVVKLVSG 135
           LAPRGWSMSEVSGNGRSKSLKGQIVGLIYATQFFRMPLIALNVLIIVVKLVSG
Sbjct: 83  LAPRGWSMSEVSGNGRSKSLKGQIVGLIYATQFFRMPLIALNVLIIVVKLVSG 135



>Os09g0326850 Conserved hypothetical protein
          Length = 114

 Score =  116 bits (290), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 61/79 (77%)

Query: 57  GMFFWPFLEGXXXXXXXXXXXXEDRFLAPRGWSMSEVSGNGRSKSLKGQIVGLIYATQFF 116
           GM  W  LEG            EDRFL PRGWSMSEVSGNG++KSLKGQIVGLIYATQF 
Sbjct: 36  GMGLWTLLEGFLLLANALAILNEDRFLGPRGWSMSEVSGNGQTKSLKGQIVGLIYATQFL 95

Query: 117 RMPLIALNVLIIVVKLVSG 135
           RMPLIALNVLIIVVKLVSG
Sbjct: 96  RMPLIALNVLIIVVKLVSG 114



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,210,299
Number of extensions: 91680
Number of successful extensions: 179
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)