BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0316400 Os03g0316400|J013002D07
         (210 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0316400  Conserved hypothetical protein                      298   3e-81

>Os03g0316400 Conserved hypothetical protein
          Length = 210

 Score =  298 bits (762), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/210 (75%), Positives = 159/210 (75%)

Query: 1   PSFLRPWRIWCRLPFSREGIGGPGSEXXXXXXXXXXXXXXXXXXXWWRNTSTLPSHQIRR 60
           PSFLRPWRIWCRLPFSREGIGGPGSE                   WWRNTSTLPSHQIRR
Sbjct: 1   PSFLRPWRIWCRLPFSREGIGGPGSELPSRRLPRFRLLPADPARRWWRNTSTLPSHQIRR 60

Query: 61  RPVAPSSTWFQGRQKRWQKPRSRPRKGWHHWCRRRQSDEGIRSHGEGVVGCGSSMSHGAG 120
           RPVAPSSTWFQGRQKRWQKPRSRPRKGWHHWCRRRQSDEGIRSHGEGVVGCGSSMSHGAG
Sbjct: 61  RPVAPSSTWFQGRQKRWQKPRSRPRKGWHHWCRRRQSDEGIRSHGEGVVGCGSSMSHGAG 120

Query: 121 VIGRGSSMSHGAGVIGRGSSMSHSATXXXXXXXXXXXXXTSSTPTXXXXXXXXXXXXXXX 180
           VIGRGSSMSHGAGVIGRGSSMSHSAT             TSSTPT               
Sbjct: 121 VIGRGSSMSHGAGVIGRGSSMSHSATGYGGFGGGGWDAGTSSTPTEAAEEEDYNVEDDDE 180

Query: 181 XXXXGQHTVIIQTRVFIGFSFTLMSFCYMH 210
               GQHTVIIQTRVFIGFSFTLMSFCYMH
Sbjct: 181 DDNDGQHTVIIQTRVFIGFSFTLMSFCYMH 210



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,711,752
Number of extensions: 290916
Number of successful extensions: 1600
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1592
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)