BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0300100 Os03g0300100|AK109538
         (519 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0300100  Conserved hypothetical protein                      629   e-180

>Os03g0300100 Conserved hypothetical protein
          Length = 519

 Score =  629 bits (1623), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 342/493 (69%), Positives = 342/493 (69%)

Query: 1   MVILKHFLIPINQDTPISMEVIPILKVHLVTPFLTLCSKDVYHGRLIISLKHRPILQVLG 60
           MVILKHFLIPINQDTPISMEVIPILKVHLVTPFLTLCSKDVYHGRLIISLKHRPILQVLG
Sbjct: 1   MVILKHFLIPINQDTPISMEVIPILKVHLVTPFLTLCSKDVYHGRLIISLKHRPILQVLG 60

Query: 61  QNLPGLNTDRALWSHWCPCIKEIKRPLXXXXXXXXXXXXNPVLVVVDHLIPAVHDEVVGA 120
           QNLPGLNTDRALWSHWCPCIKEIKRPL            NPVLVVVDHLIPAVHDEVVGA
Sbjct: 61  QNLPGLNTDRALWSHWCPCIKEIKRPLAVAQQEAACVEANPVLVVVDHLIPAVHDEVVGA 120

Query: 121 VPLPWQLECHVGEHGVGVHPPEELDLXXXXXXXXXXXXLGPESGHLGVEQRXXXXXXXXX 180
           VPLPWQLECHVGEHGVGVHPPEELDL            LGPESGHLGVEQR         
Sbjct: 121 VPLPWQLECHVGEHGVGVHPPEELDLRVREEQRAEERELGPESGHLGVEQRHVVEDLEAV 180

Query: 181 XXXXXXXXXXGLEEVVVADGVLARLGRGARDEQHPRLDVVDEGRRLRVAAVPRGPLLVPV 240
                     GLEEVVVADGVLARLGRGARDEQHPRLDVVDEGRRLRVAAVPRGPLLVPV
Sbjct: 181 DAAVVHLVLDGLEEVVVADGVLARLGRGARDEQHPRLDVVDEGRRLRVAAVPRGPLLVPV 240

Query: 241 GDLGAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAVAEL 300
           GDLGAQ                                               DEAVAEL
Sbjct: 241 GDLGAQRVGRVPERPRRRVRLVVPLGRAPGGGRRAAAPRQRVVVLRQRAVRVRDEAVAEL 300

Query: 301 DEVLLRRAELARPDGAAEHDDGEQQAHYGELRVPREXXXXXXXXXXXXXXXXXXXXXXXX 360
           DEVLLRRAELARPDGAAEHDDGEQQAHYGELRVPRE                        
Sbjct: 301 DEVLLRRAELARPDGAAEHDDGEQQAHYGELRVPREPLDLPHPPLPHHPLRHPHFAPLPL 360

Query: 361 XXXXXXXXXRSNKQINKQTLLPQPKSSKSKMQARNHRYXXXXXXXXXXXXXXXXXXXXXX 420
                    RSNKQINKQTLLPQPKSSKSKMQARNHRY                      
Sbjct: 361 LPLPPIPPHRSNKQINKQTLLPQPKSSKSKMQARNHRYTASTATAAASAARSGGGGGGGG 420

Query: 421 XXXXXXFEPRSWRRINKRKGEAEWCRDPRASEARTLASESGLRWLSERSGGGMEGEIWGD 480
                 FEPRSWRRINKRKGEAEWCRDPRASEARTLASESGLRWLSERSGGGMEGEIWGD
Sbjct: 421 GRSRGGFEPRSWRRINKRKGEAEWCRDPRASEARTLASESGLRWLSERSGGGMEGEIWGD 480

Query: 481 AKSESKSNQPPDP 493
           AKSESKSNQPPDP
Sbjct: 481 AKSESKSNQPPDP 493



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,392,197
Number of extensions: 452541
Number of successful extensions: 1147
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1144
Number of HSP's successfully gapped: 2
Length of query: 519
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 414
Effective length of database: 11,553,331
Effective search space: 4783079034
Effective search space used: 4783079034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)