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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0300100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.0483) R2 : 0.335
β1 : -1.37 (0.18) R2dD : 0.0955 R2D : 0.14
β2 : 1.04 (0.116) R2dC : 0.121 R2C : 0.0841
β3 : -1.28 (0.165) R2dE : 0.113 R2E : 0.0858
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.332 (0.111) R2dN8 : 0.0212 R2N8 : 0.000576
σ : 0.881
deviance : 357.96
__
_____
C
peak time of C : 2.23
E
wheather : radiation
threshold : 10.2
memory length : 1408
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.96 0.878 3.54 -1.43 1.01 -1.23 -1.71 -0.0634 0.309 2.71 10.02 1440 -- --
348.68 0.87 3.53 -1.43 1.02 -1.23 -1.72 -- 0.314 2.63 10.19 1408 -- --
357.99 0.881 3.54 -1.38 1.03 -1.27 -- -0.163 0.33 2.34 10.19 1408 -- --
357.96 0.881 3.53 -1.37 1.04 -1.28 -- -- 0.332 2.23 10.2 1408 -- --
386.18 0.915 3.47 -1.24 -- -1.52 -- 0.166 0.471 -- 10 1685 -- --
391.9 0.928 3.62 -1.81 0.951 -- -2 -- -0.0558 2.8 -- -- -- --
405.17 0.943 3.62 -1.77 0.94 -- -- -- -0.0431 2.43 -- -- -- --
381.48 0.91 3.51 -1.3 -- -1.92 -- -- 0.402 -- 10.01 1738 -- --
402.83 0.935 3.48 -- 1.05 -1.66 -- -- 0.578 2.1 10 1403 -- --
457.34 0.999 3.61 -1.73 -- -- -- -- -0.0198 -- -- -- -- --
487.37 1.03 3.57 -- 0.906 -- -- -- 0.154 2.4 -- -- -- --
424.55 0.96 3.45 -- -- -2.04 -- -- 0.609 -- 10.01 1683 -- --
535.93 1.08 3.57 -- -- -- -- -- 0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.77 humidity 70 720 > th dose dependent rect. 18 3
6 344.77 radiation 10 1440 > th dose independent rect. 15 21
8 345.72 radiation 20 1440 > th dose independent rect. 9 1
13 346.45 radiation 20 4320 > th dose dependent rect. 7 1
14 346.50 radiation 20 4320 > th dose independent rect. 6 2
30 346.67 radiation 1 720 < th dose dependent rect. 5 14
48 346.80 humidity 80 14400 > th dose dependent rect. 20 5
49 346.85 humidity 80 720 > th dose independent rect. 8 14
50 347.00 wind 1 43200 > th dose independent rect. 18 12
55 347.16 radiation 20 1440 > th dose independent rect. 8 4
57 347.26 radiation 20 1440 > th dose independent rect. 6 6
62 347.26 wind 1 43200 < th dose independent rect. 18 11
72 347.29 humidity 80 14400 > th dose dependent rect. 21 3
77 347.34 humidity 50 14400 > th dose dependent rect. 21 2
80 347.44 humidity 70 1440 > th dose independent rect. 18 20
83 347.64 humidity 50 14400 > th dose dependent rect. 20 5
99 347.82 radiation 1 720 < th dose independent rect. 11 8
100 347.84 radiation 1 720 < th dose dependent sin 23 NA
103 347.89 humidity 70 720 > th dose dependent rect. 9 13
104 347.91 radiation 1 720 < th dose independent sin 23 NA
108 347.93 radiation 1 720 < th dose independent rect. 11 16
132 348.34 radiation 10 1440 > th dose independent sin 4 NA
134 348.36 humidity 70 720 > th dose independent sin 15 NA
181 348.67 humidity 90 14400 < th dose dependent rect. 21 2
207 348.82 wind 3 1440 > th dose dependent rect. 13 6
208 348.85 radiation 1 720 < th dose independent sin 17 NA
209 348.86 radiation 20 1440 > th dose independent sin 7 NA
211 348.86 wind 3 1440 > th dose dependent rect. 13 9
234 348.96 radiation 10 1440 > th dose independent no NA NA
236 348.96 radiation 10 1440 > th dose independent rect. 5 13
343 349.05 humidity 80 14400 > th dose dependent sin 13 NA
345 349.11 radiation 1 720 < th dose independent rect. 5 14
356 349.18 humidity 70 720 > th dose dependent sin 19 NA
358 349.20 radiation 10 1440 > th dose independent rect. 8 23
362 349.22 humidity 70 720 > th dose independent rect. 15 14
367 349.26 humidity 80 14400 > th dose independent rect. 15 9
368 349.26 radiation 1 720 < th dose dependent rect. 11 8
384 349.39 radiation 10 1440 > th dose independent rect. 11 23
393 349.48 humidity 70 720 > th dose independent rect. 13 7
411 349.59 wind 1 43200 < th dose independent rect. 20 9
439 349.69 radiation 10 720 < th dose dependent sin 15 NA
496 349.99 wind 5 1440 < th dose independent rect. 13 9
508 350.10 radiation 1 720 < th dose dependent sin 20 NA
531 350.13 radiation 10 1440 < th dose dependent rect. 7 11
533 350.14 wind 1 43200 > th dose independent rect. 22 7
534 350.14 radiation 1 720 < th dose independent rect. 7 12
538 350.15 humidity 90 720 < th dose independent rect. 19 5
539 350.15 wind 5 1440 > th dose independent rect. 13 9
549 350.15 humidity 70 1440 < th dose independent rect. 18 20
576 350.26 humidity 80 720 > th dose independent rect. 16 6
584 350.29 humidity 70 720 > th dose independent rect. 11 9
605 350.35 wind 1 43200 < th dose independent rect. 23 6
609 350.37 radiation 1 14400 > th dose independent rect. 18 11
619 350.42 humidity 90 720 < th dose dependent rect. 19 2
633 350.49 wind 7 1440 < th dose independent rect. 15 4
640 350.52 wind 7 1440 > th dose independent rect. 15 4
655 350.60 radiation 1 720 < th dose dependent rect. 11 16
679 350.67 radiation 1 1440 > th dose dependent rect. 15 21
684 350.70 radiation 10 1440 < th dose dependent rect. 7 16
689 350.71 radiation 20 1440 < th dose dependent rect. 15 23
705 350.76 radiation 10 1440 < th dose dependent rect. 7 20
706 350.77 humidity 90 720 > th dose independent rect. 18 5
751 350.89 wind 9 1440 < th dose dependent rect. 13 6
755 350.92 humidity 90 720 > th dose independent rect. 19 2
757 350.92 humidity 80 1440 < th dose dependent rect. 10 3
801 351.11 humidity 90 14400 < th dose independent rect. 18 9
804 351.12 humidity 90 14400 < th dose independent rect. 20 6
809 351.12 humidity 90 14400 < th dose independent rect. 17 14
824 351.13 radiation 1 1440 > th dose dependent rect. 8 4
872 351.25 humidity 90 14400 < th dose independent rect. 21 4
878 351.27 humidity 80 14400 < th dose independent rect. 15 8
887 351.29 humidity 90 14400 < th dose independent rect. 14 17
889 351.30 humidity 90 14400 > th dose independent rect. 6 1
891 351.30 humidity 60 1440 > th dose dependent rect. 11 2
901 351.32 radiation 40 1440 > th dose dependent rect. 14 21
906 351.34 humidity 80 14400 < th dose independent rect. 17 6
916 351.37 humidity 80 1440 < th dose dependent rect. 18 19
945 351.46 humidity 90 14400 > th dose dependent rect. 6 1
954 351.48 humidity 90 720 < th dose dependent rect. 19 4
960 351.49 radiation 40 1440 < th dose dependent rect. 15 21