BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0297400 Os03g0297400|AK101597
         (387 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0297400  Malonyl CoA-acyl carrier protein transacylase ...   649   0.0  

>Os03g0297400 Malonyl CoA-acyl carrier protein transacylase family protein
          Length = 387

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/373 (87%), Positives = 328/373 (87%)

Query: 15  GSPVSTMASTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRSRVSAAGVSLGSEVAVGSD 74
           GSPVSTMAST                             CRSRVSAAGVSLGSEVAVGSD
Sbjct: 15  GSPVSTMASTLAFLRPSAPAPLAASRGAARGVPAAVRVPCRSRVSAAGVSLGSEVAVGSD 74

Query: 75  ALFADYKPTTAFLFPGQGAQTVGMGAEAVNVPAAAKLFDKANDILGYDLLDFCTNGPKEK 134
           ALFADYKPTTAFLFPGQGAQTVGMGAEAVNVPAAAKLFDKANDILGYDLLDFCTNGPKEK
Sbjct: 75  ALFADYKPTTAFLFPGQGAQTVGMGAEAVNVPAAAKLFDKANDILGYDLLDFCTNGPKEK 134

Query: 135 LDSTVISQPAIYVTSLAAVEVLRSRDGGQNVIDSVDVTCGLSLGEYTALAFAGAFSFEDG 194
           LDSTVISQPAIYVTSLAAVEVLRSRDGGQNVIDSVDVTCGLSLGEYTALAFAGAFSFEDG
Sbjct: 135 LDSTVISQPAIYVTSLAAVEVLRSRDGGQNVIDSVDVTCGLSLGEYTALAFAGAFSFEDG 194

Query: 195 LKLVKLRGEXXXXXXXXXXXXXXXXIGLDSEKVQQLCDAANEEVDEKERVQIANFLCPGN 254
           LKLVKLRGE                IGLDSEKVQQLCDAANEEVDEKERVQIANFLCPGN
Sbjct: 195 LKLVKLRGEAMQDASDAASSAMVSVIGLDSEKVQQLCDAANEEVDEKERVQIANFLCPGN 254

Query: 255 YAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTSFMQPAVSRLESALAETEIKTPRI 314
           YAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTSFMQPAVSRLESALAETEIKTPRI
Sbjct: 255 YAVSGGVKGIEAVEAKAKSFKARMTVRLAVAGAFHTSFMQPAVSRLESALAETEIKTPRI 314

Query: 315 PVISNVDASPHSDPDTIKKILARQVTSPVQWESTVKTLMGKGLEKSYELGPGKVIAGILK 374
           PVISNVDASPHSDPDTIKKILARQVTSPVQWESTVKTLMGKGLEKSYELGPGKVIAGILK
Sbjct: 315 PVISNVDASPHSDPDTIKKILARQVTSPVQWESTVKTLMGKGLEKSYELGPGKVIAGILK 374

Query: 375 RIDKGASIENIGA 387
           RIDKGASIENIGA
Sbjct: 375 RIDKGASIENIGA 387



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,294,591
Number of extensions: 392567
Number of successful extensions: 746
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)