BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0279600 Os03g0279600|AK061080
         (247 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0279600  Conserved hypothetical protein                      272   2e-73

>Os03g0279600 Conserved hypothetical protein
          Length = 247

 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/204 (69%), Positives = 142/204 (69%)

Query: 26  VDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEFXXXXXXXXXXXXXXXXXXXXXX 85
           VDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEF                      
Sbjct: 26  VDALFLQNLMSRVQLRPPFLDTNSFLTQDLDEFLLNEFAALSAAAGASDDDDDGEDGEGE 85

Query: 86  XXXXXXXXXXXXXXXXXXXXXXKLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGF 145
                                 KLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGF
Sbjct: 86  GSDGEVVSGEARRRRTLAREEAKLEKEIVRLVLAGEAEEALKPNSGQSVAVGDHHICVGF 145

Query: 146 HDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPLXXXXXXXXXXXXXXXXXXLSS 205
           HDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPL                  LSS
Sbjct: 146 HDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPLAAATARAKEKEREKREKELSS 205

Query: 206 GLRDLILGDTGSGANGSKENGKGG 229
           GLRDLILGDTGSGANGSKENGKGG
Sbjct: 206 GLRDLILGDTGSGANGSKENGKGG 229



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,569,422
Number of extensions: 186816
Number of successful extensions: 454
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)