BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0275700 Os03g0275700|AK111329
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0275700  Conserved hypothetical protein                      272   1e-73
Os08g0141200                                                      110   6e-25

>Os03g0275700 Conserved hypothetical protein
          Length = 190

 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 140/190 (73%), Positives = 140/190 (73%)

Query: 1   MFARERMCDGTAAAVGAQGPERRWWRWQSGGRETRXXXXXXXXXXXXXXXXXXXXXEHHR 60
           MFARERMCDGTAAAVGAQGPERRWWRWQSGGRETR                     EHHR
Sbjct: 1   MFARERMCDGTAAAVGAQGPERRWWRWQSGGRETRWLGADTLLGDAGAAIDAWAITEHHR 60

Query: 61  HPGSGRARRPCHGXXXXXXXXXXXXHLRAVPEAPRGPPSRAGHAACAVPLLLTSLQRKRI 120
           HPGSGRARRPCHG            HLRAVPEAPRGPPSRAGHAACAVPLLLTSLQRKRI
Sbjct: 61  HPGSGRARRPCHGPTTRSVTPVVVSHLRAVPEAPRGPPSRAGHAACAVPLLLTSLQRKRI 120

Query: 121 ADAQSTTPSSCMSTIXXXXXXXXXXXXXXXXXGKLSTCLNFLPPPRPINDFWRGSCISDQ 180
           ADAQSTTPSSCMSTI                 GKLSTCLNFLPPPRPINDFWRGSCISDQ
Sbjct: 121 ADAQSTTPSSCMSTIDSVLASDALDASAMGDLGKLSTCLNFLPPPRPINDFWRGSCISDQ 180

Query: 181 SPLARPFCHQ 190
           SPLARPFCHQ
Sbjct: 181 SPLARPFCHQ 190



>Os08g0141200 
          Length = 179

 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/109 (57%), Positives = 65/109 (59%)

Query: 1   MFARERMCDGTAAAVGAQGPERRWWRWQSGGRETRXXXXXXXXXXXXXXXXXXXXXEHHR 60
           +FARERM DGTAAA GAQ PERR WRWQSGG+E R                     EHHR
Sbjct: 69  LFARERMGDGTAAATGAQEPERRQWRWQSGGQEPRWLGANVLLGDAGAAADGWAIAEHHR 128

Query: 61  HPGSGRARRPCHGXXXXXXXXXXXXHLRAVPEAPRGPPSRAGHAACAVP 109
           HPGSG ARRPCHG             L AV EAPRGPP RAGHAACA P
Sbjct: 129 HPGSGCARRPCHGPTTWTVASAVAARLCAVLEAPRGPPPRAGHAACAAP 177



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,635,074
Number of extensions: 236702
Number of successful extensions: 764
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)