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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0275700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.048) R2 : 0.412
β1 : 1.58 (0.176) R2dD : 0.108 R2D : 0.111
β2 : 1.75 (0.115) R2dC : 0.301 R2C : 0.304
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00627 (0.102) R2dN8 : 6.47e-06 R2N8 : -0.00103
σ : 0.902
deviance : 371.2
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
342.38 0.869 4.2 1.67 0.884 0.83 1.05 0.797 0.00976 21.5 0.6071 45 -- --
343.35 0.863 4.19 1.71 0.936 0.766 1.85 -- 0.0271 22 0.5506 34 -- --
343.41 0.863 4.19 1.62 0.954 0.799 -- 1.5 0.0261 21.4 0.7999 57 -- --
357.02 0.88 4.19 1.66 0.886 0.803 -- -- 0.0281 21.7 0.56 34 -- --
363.95 0.889 4.18 1.66 -- 1.31 -- 1.32 -0.00193 -- 0.63 28 -- --
356.76 0.885 4.21 1.65 1.76 -- 1.86 -- -0.000461 22.8 -- -- -- --
371.2 0.902 4.22 1.58 1.75 -- -- -- -0.00627 22.8 -- -- -- --
368.15 0.894 4.17 1.61 -- 1.43 -- -- 0.0349 -- 6.558 6 -- --
421.71 0.956 4.22 -- 0.765 0.931 -- -- -0.128 21.6 8.1 12 -- --
560.31 1.11 4.17 1.61 -- -- -- -- 0.00449 -- -- -- -- --
436.64 0.977 4.25 -- 1.76 -- -- -- -0.182 22.9 -- -- -- --
433.31 0.969 4.2 -- -- 1.4 -- -- -0.12 -- 7.241 8 -- --
628.8 1.17 4.21 -- -- -- -- -- -0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 326.68 wind 1.0 10 < th dose dependent rect. 13 5
5 329.28 wind 1.0 10 < th dose independent rect. 13 5
13 332.30 wind 1.0 10 < th dose independent rect. 13 1
15 332.30 wind 1.0 10 < th dose dependent rect. 13 1
19 333.48 atmosphere 1000.0 90 < th dose independent rect. 13 1
32 334.05 atmosphere 1000.0 10 < th dose dependent rect. 14 1
48 335.82 wind 3.0 10 > th dose independent rect. 10 1
60 337.37 temperature 30.0 10 < th dose independent rect. 13 1
61 337.74 humidity 90.0 720 < th dose dependent rect. 19 2
65 338.19 humidity 50.0 720 > th dose dependent rect. 17 2
67 338.33 atmosphere 1005.0 10 > th dose independent rect. 5 3
68 338.47 radiation 10.0 720 < th dose dependent rect. 14 5
69 338.48 temperature 30.0 90 < th dose independent rect. 13 1
70 338.55 precipitation 0.1 1440 > th dose independent rect. 21 3
72 338.55 precipitation 0.1 1440 > th dose dependent rect. 21 3
74 338.80 atmosphere 1000.0 90 < th dose independent rect. 12 5
76 338.96 humidity 80.0 720 < th dose dependent rect. 19 5
77 338.97 radiation 1.0 90 > th dose independent rect. 9 23
84 339.23 atmosphere 1000.0 270 < th dose independent rect. 10 7
91 339.38 atmosphere 1000.0 270 < th dose independent rect. 10 10
100 339.55 precipitation 0.1 1440 > th dose independent rect. 20 5
101 339.55 precipitation 0.1 1440 > th dose dependent rect. 20 5
102 339.58 atmosphere 1000.0 270 < th dose independent rect. 10 5
104 339.70 radiation 1.0 30 > th dose independent rect. 14 23
109 339.84 humidity 80.0 720 < th dose independent rect. 19 2
111 339.85 atmosphere 1000.0 90 < th dose independent rect. 12 8
113 339.86 humidity 70.0 720 > th dose independent rect. 15 4
114 339.86 wind 3.0 4320 < th dose dependent rect. 8 3
130 340.28 wind 1.0 14400 > th dose independent rect. 1 1
132 340.31 radiation 10.0 720 < th dose independent rect. 15 4
133 340.31 atmosphere 1000.0 90 < th dose independent rect. 12 11
136 340.36 atmosphere 1000.0 10 < th dose dependent rect. 13 7
140 340.41 humidity 60.0 720 > th dose dependent rect. 15 5
142 340.43 precipitation 0.1 720 < th dose independent rect. 5 17
144 340.43 precipitation 0.1 720 < th dose dependent rect. 5 17
146 340.46 atmosphere 1000.0 270 < th dose dependent rect. 10 7
152 340.50 radiation 1.0 90 > th dose independent rect. 14 17
160 340.57 humidity 50.0 720 > th dose dependent rect. 13 15
161 340.58 wind 3.0 4320 < th dose independent rect. 8 3
163 340.60 wind 3.0 4320 < th dose independent rect. 8 1
164 340.61 wind 1.0 1440 < th dose dependent rect. 6 1
172 340.66 wind 3.0 4320 > th dose independent rect. 8 2
185 340.80 radiation 1.0 720 > th dose independent rect. 10 7
186 340.80 precipitation 0.1 720 < th dose independent rect. 10 22
187 340.80 precipitation 0.1 720 < th dose dependent rect. 10 22
205 340.99 humidity 90.0 720 < th dose dependent rect. 14 2
206 340.99 precipitation 0.1 43200 > th dose dependent rect. 19 2
211 341.05 wind 1.0 14400 < th dose independent rect. 1 1
218 341.10 humidity 90.0 720 < th dose dependent rect. 12 16
219 341.10 humidity 90.0 30 < th dose dependent rect. 14 18
223 341.12 atmosphere 1000.0 10 < th dose dependent rect. 13 20
224 341.13 humidity 90.0 720 < th dose dependent rect. 12 19
234 341.20 humidity 50.0 720 > th dose dependent rect. 8 20
243 341.28 precipitation 0.1 720 < th dose independent rect. 10 7
245 341.28 precipitation 0.1 720 < th dose dependent rect. 10 7
247 341.30 wind 1.0 14400 < th dose dependent rect. 1 3
251 341.31 wind 1.0 14400 < th dose dependent rect. 1 1
254 341.31 radiation 10.0 10 < th dose dependent rect. 7 22
255 341.32 radiation 20.0 90 < th dose independent rect. 8 1
263 341.38 humidity 50.0 30 > th dose independent rect. 8 12
277 341.45 atmosphere 1000.0 270 < th dose dependent rect. 10 19
281 341.47 radiation 40.0 10 > th dose dependent rect. 14 1
344 341.56 wind 1.0 43200 < th dose dependent rect. 12 1
354 341.61 humidity 60.0 270 < th dose dependent rect. 13 2
355 341.62 atmosphere 1000.0 270 < th dose independent rect. 10 19
368 341.67 wind 1.0 14400 > th dose independent rect. 24 3
377 341.71 radiation 1.0 30 < th dose dependent rect. 3 23
387 341.75 atmosphere 1000.0 270 < th dose independent rect. 10 16
389 341.76 wind 7.0 43200 > th dose independent rect. 15 14
395 341.79 atmosphere 1000.0 10 < th dose dependent rect. 13 17
409 341.85 humidity 80.0 720 < th dose independent rect. 12 12
410 341.85 wind 7.0 43200 < th dose independent rect. 15 14
423 341.89 wind 7.0 43200 > th dose dependent rect. 15 3
427 341.90 temperature 20.0 10 > th dose independent rect. 18 11
430 341.91 humidity 80.0 720 > th dose independent rect. 12 16
431 341.92 atmosphere 1000.0 90 < th dose dependent rect. 2 12
433 341.93 radiation 10.0 10 < th dose dependent sin 13 NA
439 341.94 wind 7.0 43200 > th dose dependent rect. 15 5
442 341.95 humidity 50.0 720 > th dose independent rect. 17 17
446 341.96 humidity 80.0 720 < th dose independent rect. 12 15
452 341.99 humidity 90.0 90 > th dose independent rect. 9 1
453 341.99 humidity 90.0 90 > th dose dependent rect. 9 1
456 342.00 temperature 30.0 90 < th dose dependent rect. 12 1
464 342.05 humidity 90.0 720 < th dose dependent sin 15 NA
470 342.08 wind 7.0 43200 > th dose independent rect. 15 9
478 342.11 wind 7.0 43200 > th dose dependent rect. 15 1
494 342.15 radiation 1.0 90 > th dose dependent rect. 14 17
499 342.16 atmosphere 1000.0 10 < th dose dependent rect. 3 12
506 342.18 atmosphere 1000.0 270 < th dose dependent rect. 1 19
509 342.20 wind 7.0 43200 < th dose independent rect. 15 9
511 342.21 precipitation 0.1 43200 > th dose independent rect. 19 2
523 342.24 humidity 50.0 30 > th dose independent rect. 8 21
541 342.27 wind 3.0 14400 < th dose dependent rect. 6 3
547 342.28 wind 7.0 43200 < th dose independent rect. 15 1
553 342.28 atmosphere 1000.0 90 < th dose dependent rect. 12 11
557 342.29 atmosphere 1000.0 90 < th dose dependent rect. 12 20
562 342.31 wind 7.0 43200 > th dose independent rect. 15 1
567 342.32 humidity 50.0 270 < th dose independent rect. 13 2
569 342.32 atmosphere 1000.0 90 < th dose independent rect. 12 20
608 342.42 temperature 30.0 30 < th dose independent rect. 13 15
610 342.42 atmosphere 1000.0 10 > th dose dependent rect. 5 3
613 342.43 atmosphere 1000.0 720 < th dose dependent rect. 2 12
619 342.45 atmosphere 1000.0 720 < th dose dependent rect. 6 8
625 342.48 wind 7.0 43200 > th dose independent rect. 15 5
635 342.50 atmosphere 1000.0 90 < th dose independent rect. 12 16
645 342.53 precipitation 0.1 1440 > th dose independent rect. 21 1
648 342.53 precipitation 0.1 1440 > th dose dependent rect. 21 1
666 342.57 atmosphere 1000.0 10 < th dose independent rect. 12 9
676 342.60 humidity 50.0 1440 > th dose independent rect. 14 2
682 342.61 atmosphere 1000.0 270 < th dose dependent sin 22 NA
686 342.62 precipitation 0.1 43200 < th dose independent rect. 19 2
689 342.62 precipitation 0.1 43200 < th dose dependent rect. 19 2
709 342.66 temperature 20.0 10 > th dose independent rect. 8 21
716 342.67 wind 7.0 43200 > th dose dependent rect. 15 9
718 342.67 wind 7.0 43200 > th dose dependent rect. 15 12
748 342.73 radiation 40.0 43200 > th dose independent rect. 13 2
755 342.74 wind 1.0 14400 < th dose dependent rect. 14 19
763 342.76 precipitation 0.1 720 < th dose independent rect. 14 17
767 342.76 precipitation 0.1 720 < th dose dependent rect. 14 17
774 342.78 temperature 25.0 10 > th dose independent rect. 3 2
786 342.80 humidity 50.0 720 > th dose dependent rect. 8 17
789 342.81 humidity 90.0 90 < th dose independent rect. 14 17
791 342.82 precipitation 0.1 720 < th dose independent rect. 14 8
793 342.82 precipitation 0.1 720 < th dose dependent rect. 14 8
795 342.83 precipitation 0.1 90 > th dose dependent rect. 15 2
796 342.83 wind 1.0 14400 < th dose dependent rect. 22 10
798 342.84 temperature 25.0 90 > th dose independent rect. 3 2
800 342.84 wind 9.0 43200 > th dose independent rect. 15 3
801 342.84 humidity 80.0 720 < th dose independent rect. 14 9
817 342.87 radiation 40.0 43200 > th dose independent rect. 13 19
839 342.88 radiation 40.0 720 < th dose dependent rect. 16 9
843 342.88 humidity 50.0 10 > th dose dependent rect. 8 21
844 342.89 wind 1.0 14400 > th dose independent rect. 14 1
845 342.89 wind 7.0 43200 < th dose independent rect. 15 5
853 342.90 atmosphere 1005.0 30 > th dose independent rect. 1 7
885 342.96 wind 3.0 14400 < th dose dependent rect. 1 9
896 342.98 humidity 90.0 720 < th dose dependent rect. 12 4
928 343.02 temperature 25.0 10 > th dose dependent rect. 4 1
934 343.03 wind 1.0 14400 < th dose independent rect. 22 11
944 343.04 wind 1.0 14400 < th dose independent rect. 24 9
957 343.05 wind 9.0 43200 < th dose independent rect. 15 3
967 343.06 wind 1.0 14400 < th dose independent rect. 20 13
986 343.08 wind 1.0 14400 > th dose independent rect. 24 9