BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0275400 Os03g0275400|AK120743
         (299 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0275400  Zinc finger, DHHC-type domain containing protein    583   e-167

>Os03g0275400 Zinc finger, DHHC-type domain containing protein
          Length = 299

 Score =  583 bits (1503), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/299 (95%), Positives = 286/299 (95%)

Query: 1   MSRLASASGLHRLRRSPWEVLWSGLASCGLTLLSQLAVAMVPRLFPSLSLLAMLPXXXXX 60
           MSRLASASGLHRLRRSPWEVLWSGLASCGLTLLSQLAVAMVPRLFPSLSLLAMLP     
Sbjct: 1   MSRLASASGLHRLRRSPWEVLWSGLASCGLTLLSQLAVAMVPRLFPSLSLLAMLPVAGVV 60

Query: 61  XXXXXXXXRFWRRFIGVAASAPLFVLFNILFLWGVYVFVIRGGTSSLLDMVINAECAMLL 120
                   RFWRRFIGVAASAPLFVLFNILFLWGVYVFVIRGGTSSLLDMVINAECAMLL
Sbjct: 61  FLAVIVVGRFWRRFIGVAASAPLFVLFNILFLWGVYVFVIRGGTSSLLDMVINAECAMLL 120

Query: 121 FGLYRIFSGDPGIVIYESSFFEEAGCKDFVEAICPSEKFSSLPRVRHCNCCKANVRGYDH 180
           FGLYRIFSGDPGIVIYESSFFEEAGCKDFVEAICPSEKFSSLPRVRHCNCCKANVRGYDH
Sbjct: 121 FGLYRIFSGDPGIVIYESSFFEEAGCKDFVEAICPSEKFSSLPRVRHCNCCKANVRGYDH 180

Query: 181 HCPAFGNCIGQKNHRLFMALLTGFVVAESTYTMCSTKYITRCINSGTIRSENPMSVNMVI 240
           HCPAFGNCIGQKNHRLFMALLTGFVVAESTYTMCSTKYITRCINSGTIRSENPMSVNMVI
Sbjct: 181 HCPAFGNCIGQKNHRLFMALLTGFVVAESTYTMCSTKYITRCINSGTIRSENPMSVNMVI 240

Query: 241 GTMLFSVLQVLWQAVFLIWHIYCICFNIKTDEWVMSNFPCFGLFLHQLQAIFSFAVSYS 299
           GTMLFSVLQVLWQAVFLIWHIYCICFNIKTDEWVMSNFPCFGLFLHQLQAIFSFAVSYS
Sbjct: 241 GTMLFSVLQVLWQAVFLIWHIYCICFNIKTDEWVMSNFPCFGLFLHQLQAIFSFAVSYS 299



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.141    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,006,861
Number of extensions: 323957
Number of successful extensions: 1001
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 156 (64.7 bits)