BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0259700 Os03g0259700|015-018-F05
(464 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0259700 Protein of unknown function DUF1630 family pro... 821 0.0
>Os03g0259700 Protein of unknown function DUF1630 family protein
Length = 464
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/464 (89%), Positives = 415/464 (89%)
Query: 1 VAAWPAPVPGRPMELPIGSAALRVHXXXXXXXXXXXXXXXXXXXSVPYGLFHDADLFAAF 60
VAAWPAPVPGRPMELPIGSAALRVH SVPYGLFHDADLFAAF
Sbjct: 1 VAAWPAPVPGRPMELPIGSAALRVHLPPAADDPGPPPALLPANPSVPYGLFHDADLFAAF 60
Query: 61 RGXXXXXXXXXXXMVVGEPVLVVAPSPPQCSEAVAGLVSLVAPLLYSVDFRPYFTIHDPD 120
RG MVVGEPVLVVAPSPPQCSEAVAGLVSLVAPLLYSVDFRPYFTIHDPD
Sbjct: 61 RGLLLHLWTLWELMVVGEPVLVVAPSPPQCSEAVAGLVSLVAPLLYSVDFRPYFTIHDPD 120
Query: 121 FARLNALAEGEVFPPMVLGVTNLFFLKSLKSIPNVVSVGSPNPNSTRVLPVGGQSHGSGN 180
FARLNALAEGEVFPPMVLGVTNLFFLKSLKSIPNVVSVGSPNPNSTRVLPVGGQSHGSGN
Sbjct: 121 FARLNALAEGEVFPPMVLGVTNLFFLKSLKSIPNVVSVGSPNPNSTRVLPVGGQSHGSGN 180
Query: 181 GINGTPGKLKLDKLAINKFSPTGLLNSIKLRREGPLCLMTEHKEALWSTYVSTTKPDTSV 240
GINGTPGKLKLDKLAINKFSPTGLLNSIKLRREGPLCLMTEHKEALWSTYVSTTKPDTSV
Sbjct: 181 GINGTPGKLKLDKLAINKFSPTGLLNSIKLRREGPLCLMTEHKEALWSTYVSTTKPDTSV 240
Query: 241 LNRLIDAGVSPRIEESMSVVNNEILRRHFLELTTNFLAPFGPYLRTTTPSEGSSPFVDPP 300
LNRLIDAGVSPRIEESMSVVNNEILRRHFLELTTNFLAPFGPYLRTTTPSEGSSPFVDPP
Sbjct: 241 LNRLIDAGVSPRIEESMSVVNNEILRRHFLELTTNFLAPFGPYLRTTTPSEGSSPFVDPP 300
Query: 301 LLPPFHADEFVNGLAARGAGKFLSKRMKSNWLDLYRRFLEGPNFMPWFXXXXXXXXXXXX 360
LLPPFHADEFVNGLAARGAGKFLSKRMKSNWLDLYRRFLEGPNFMPWF
Sbjct: 301 LLPPFHADEFVNGLAARGAGKFLSKRMKSNWLDLYRRFLEGPNFMPWFRQRRAAAEQEQQ 360
Query: 361 XXXXXXXMNVDIEKLMSKLSELERIDSFNAIERYLLREMENSRTGATESVTVCEKLKGDL 420
MNVDIEKLMSKLSELERIDSFNAIERYLLREMENSRTGATESVTVCEKLKGDL
Sbjct: 361 RLWRQARMNVDIEKLMSKLSELERIDSFNAIERYLLREMENSRTGATESVTVCEKLKGDL 420
Query: 421 RAAFSVLPKDMQQLLLSNPKRALLLQGSNEKIPGLDGIVSQTSL 464
RAAFSVLPKDMQQLLLSNPKRALLLQGSNEKIPGLDGIVSQTSL
Sbjct: 421 RAAFSVLPKDMQQLLLSNPKRALLLQGSNEKIPGLDGIVSQTSL 464
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,046,311
Number of extensions: 634588
Number of successful extensions: 1770
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1768
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 360
Effective length of database: 11,605,545
Effective search space: 4177996200
Effective search space used: 4177996200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)