BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0259300 Os03g0259300|AK063394
         (694 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0259300  Tetratricopeptide-like helical domain containi...  1009   0.0  

>Os03g0259300 Tetratricopeptide-like helical domain containing protein
          Length = 694

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/694 (74%), Positives = 519/694 (74%)

Query: 1   MQNRRRSRPVVPTPMARVRHRHXXXXXXXXXXXXXXXXXXXXXXRPFVLVLSRDDFLKDT 60
           MQNRRRSRPVVPTPMARVRHRH                      RPFVLVLSRDDFLKDT
Sbjct: 1   MQNRRRSRPVVPTPMARVRHRHLLLLVAAVAAAASALLPCASAVRPFVLVLSRDDFLKDT 60

Query: 61  AGAHPSLXXXXXXXXXXXXXXXXXXXTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLF 120
           AGAHPSL                   TD                              LF
Sbjct: 61  AGAHPSLPSADADSDEWDDFDDESPATDPLLSPSSWVPLLDPASASPSGDEPDSPSDALF 120

Query: 121 VAGVRXXXXXXXXXXXXXXXXXXXXXXXXXTGGHPGAQSALAFLSGAGMTRPASRSRAFL 180
           VAGVR                         TGGHPGAQSALAFLSGAGMTRPASRSRAFL
Sbjct: 121 VAGVRAMLSAASAGDDAAFATAAAQIEAAATGGHPGAQSALAFLSGAGMTRPASRSRAFL 180

Query: 181 LHKFAADAGDLQSKMALAYSFFRQEMXXXXXXXXXXXXXXXXXXXXISKEPPVIEPVRLH 240
           LHKFAADAGDLQSKMALAYSFFRQEM                    ISKEPPVIEPVRLH
Sbjct: 181 LHKFAADAGDLQSKMALAYSFFRQEMYEEAVTLYAELAEAALTSSLISKEPPVIEPVRLH 240

Query: 241 SGTEENKEALRKSRGEDDEDFQITEYQAQRGNTVAMHKXXXXXXXXXXXXXXXXXKAYHW 300
           SGTEENKEALRKSRGEDDEDFQITEYQAQRGNTVAMHK                 KAYHW
Sbjct: 241 SGTEENKEALRKSRGEDDEDFQITEYQAQRGNTVAMHKLGLLYYYGLRGVRRDYGKAYHW 300

Query: 301 FSKAVEKGDTRAMELLGEIYARGAGVERNYTEAYKWLTLAAKQQQYSAXXXXXXXXXXXX 360
           FSKAVEKGDTRAMELLGEIYARGAGVERNYTEAYKWLTLAAKQQQYSA            
Sbjct: 301 FSKAVEKGDTRAMELLGEIYARGAGVERNYTEAYKWLTLAAKQQQYSAYNGLGYLYVKGY 360

Query: 361 XXEKKNLTKAKEFFEIAAEHKEHGGYYNLGVLYLKGIGVKRDVMTACNFFLRAVNAGQPK 420
             EKKNLTKAKEFFEIAAEHKEHGGYYNLGVLYLKGIGVKRDVMTACNFFLRAVNAGQPK
Sbjct: 361 GVEKKNLTKAKEFFEIAAEHKEHGGYYNLGVLYLKGIGVKRDVMTACNFFLRAVNAGQPK 420

Query: 421 AIYQVAKLFQKGVGLKRNLQMAAVMYKSVAERGPWSSLSRWALESYLKGDIGKALLLYSR 480
           AIYQVAKLFQKGVGLKRNLQMAAVMYKSVAERGPWSSLSRWALESYLKGDIGKALLLYSR
Sbjct: 421 AIYQVAKLFQKGVGLKRNLQMAAVMYKSVAERGPWSSLSRWALESYLKGDIGKALLLYSR 480

Query: 481 MADLGYEVAQSNAAWILDRYGDESICMGESGFCTDMERHLRAHALWWQASEQGNEHAALL 540
           MADLGYEVAQSNAAWILDRYGDESICMGESGFCTDMERHLRAHALWWQASEQGNEHAALL
Sbjct: 481 MADLGYEVAQSNAAWILDRYGDESICMGESGFCTDMERHLRAHALWWQASEQGNEHAALL 540

Query: 541 IGDAYYYGRGVGRDYERAAEAYMHAQSQSNAQAMFNLGYMHEHGHGLPLDLHLAKRYYDQ 600
           IGDAYYYGRGVGRDYERAAEAYMHAQSQSNAQAMFNLGYMHEHGHGLPLDLHLAKRYYDQ
Sbjct: 541 IGDAYYYGRGVGRDYERAAEAYMHAQSQSNAQAMFNLGYMHEHGHGLPLDLHLAKRYYDQ 600

Query: 601 AVEVDPAAKLPVMLALTSLWIRKNYDGSFLVHFIDSLPXXXXXXXXXXXXXLMDEGNATI 660
           AVEVDPAAKLPVMLALTSLWIRKNYDGSFLVHFIDSLP             LMDEGNATI
Sbjct: 601 AVEVDPAAKLPVMLALTSLWIRKNYDGSFLVHFIDSLPEVYPVVEEWVEDVLMDEGNATI 660

Query: 661 FTLFACLVTVLYLXXXXXXXXXXXXXXXPDGAPI 694
           FTLFACLVTVLYL               PDGAPI
Sbjct: 661 FTLFACLVTVLYLRERQRRQAAAANPQQPDGAPI 694



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,528,310
Number of extensions: 598610
Number of successful extensions: 1359
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1343
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 586
Effective length of database: 11,396,689
Effective search space: 6678459754
Effective search space used: 6678459754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)