Os03g0259300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0259300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.64 | 0.478 | 10 | -0.501 | 1.74 | -1.01 | -0.482 | -0.692 | -0.654 | 9.96 | 21.4 | 1101 | -- | -- |
| 104.3 | 0.476 | 10 | -0.356 | 1.74 | -0.899 | -0.336 | -- | -0.609 | 9.97 | 21.8 | 1061 | -- | -- |
| 104.49 | 0.476 | 10 | -0.484 | 1.74 | -1 | -- | -0.553 | -0.646 | 9.94 | 21.38 | 1101 | -- | -- |
| 104.85 | 0.477 | 10 | -0.363 | 1.73 | -0.905 | -- | -- | -0.609 | 9.94 | 21.8 | 1061 | -- | -- |
| 267.1 | 0.761 | 10.1 | -0.419 | -- | -1.33 | -- | -0.463 | -0.537 | -- | 21.9 | 858 | -- | -- |
| 133.3 | 0.541 | 10.1 | -0.704 | 1.84 | -- | -0.431 | -- | -0.882 | 10.1 | -- | -- | -- | -- |
| 134.03 | 0.542 | 10.1 | -0.722 | 1.84 | -- | -- | -- | -0.884 | 10.1 | -- | -- | -- | -- |
| 267.47 | 0.762 | 10 | -0.263 | -- | -1.33 | -- | -- | -0.472 | -- | 21.84 | 858 | -- | -- |
| 107.94 | 0.484 | 9.99 | -- | 1.73 | -1.02 | -- | -- | -0.542 | 9.94 | 21.8 | 1107 | -- | -- |
| 339.26 | 0.861 | 10.1 | -0.746 | -- | -- | -- | -- | -0.886 | -- | -- | -- | -- | -- |
| 147.75 | 0.569 | 10 | -- | 1.85 | -- | -- | -- | -0.803 | 10.1 | -- | -- | -- | -- |
| 269.12 | 0.764 | 10 | -- | -- | -1.39 | -- | -- | -0.428 | -- | 21.85 | 861 | -- | -- |
| 353.92 | 0.878 | 10.1 | -- | -- | -- | -- | -- | -0.803 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.29 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 106.50 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 3 | 106.58 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 9 | 107.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 21 | 107.54 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 22 | 107.55 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 38 | 107.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 46 | 108.15 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 63 | 108.39 | temperature | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 70 | 108.51 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 98 | 108.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 116 | 109.05 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 119 | 109.09 | temperature | 20.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 129 | 109.18 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 148 | 109.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 161 | 109.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 181 | 109.51 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 185 | 109.53 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 187 | 109.55 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 207 | 109.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 220 | 109.74 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 260 | 109.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 268 | 109.94 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 318 | 110.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 365 | 110.35 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 377 | 110.41 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 396 | 110.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 449 | 110.64 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 525 | 110.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 529 | 110.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 532 | 110.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 19 |
| 608 | 111.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 615 | 111.17 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 633 | 111.25 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 642 | 111.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 675 | 111.36 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 722 | 111.54 | temperature | 25.0 | 720 | < th | dose dependent | sin | 0 | NA |
| 780 | 111.72 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 785 | 111.75 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 824 | 111.90 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 846 | 111.96 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 853 | 111.98 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 870 | 112.03 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 875 | 112.05 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 893 | 112.10 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 935 | 112.21 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 944 | 112.24 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 995 | 112.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |