BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0255900 Os03g0255900|AK063057
         (98 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0255900  Conserved hypothetical protein                      198   9e-52
Os01g0254400                                                       84   3e-17

>Os03g0255900 Conserved hypothetical protein
          Length = 98

 Score =  198 bits (503), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MVRYWVFMGASWMGFASSMVMTLSLLVRMPVDSRNVRWSFAVAYSTLVLTFIVSQPRTHL 60
          MVRYWVFMGASWMGFASSMVMTLSLLVRMPVDSRNVRWSFAVAYSTLVLTFIVSQPRTHL
Sbjct: 1  MVRYWVFMGASWMGFASSMVMTLSLLVRMPVDSRNVRWSFAVAYSTLVLTFIVSQPRTHL 60

Query: 61 SLDILVWVAVLAFLWFTISLRPERRAKIAQAICCGHNS 98
          SLDILVWVAVLAFLWFTISLRPERRAKIAQAICCGHNS
Sbjct: 61 SLDILVWVAVLAFLWFTISLRPERRAKIAQAICCGHNS 98



>Os01g0254400 
          Length = 226

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 58/79 (73%)

Query: 3   RYWVFMGASWMGFASSMVMTLSLLVRMPVDSRNVRWSFAVAYSTLVLTFIVSQPRTHLSL 62
           RYW+FM ASW GF SSM++TL LL  +P  SR V+W F V+YS+LVLTFI SQ RT L++
Sbjct: 117 RYWLFMAASWAGFGSSMLLTLGLLTGVPSRSRAVQWPFLVSYSSLVLTFITSQSRTPLAM 176

Query: 63  DILVWVAVLAFLWFTISLR 81
           D+++W AV+A L   I  R
Sbjct: 177 DVVIWGAVMAVLTVGIKYR 195



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.333    0.135    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,094,639
Number of extensions: 88614
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 149 (62.0 bits)