BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0243800 Os03g0243800|J075143A17
         (122 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0243800  Proteinase inhibitor, PMP and SGCI repeat cont...   162   5e-41
AK063412                                                          161   1e-40

>Os03g0243800 Proteinase inhibitor, PMP and SGCI repeat containing protein
          Length = 122

 Score =  162 bits (410), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 47  PEETSNDQQDKNDTNKISRKTSRGFDLIECHMLPISQSTKSHGDSSSRNENIVECHNDVR 106
           PEETSNDQQDKNDTNKISRKTSRGFDLIECHMLPISQSTKSHGDSSSRNENIVECHNDVR
Sbjct: 47  PEETSNDQQDKNDTNKISRKTSRGFDLIECHMLPISQSTKSHGDSSSRNENIVECHNDVR 106

Query: 107 VCYKLPCEGSPKLNLV 122
           VCYKLPCEGSPKLNLV
Sbjct: 107 VCYKLPCEGSPKLNLV 122



>AK063412 
          Length = 210

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 47  PEETSNDQQDKNDTNKISRKTSRGFDLIECHMLPISQSTKSHGDSSSRNENIVECHNDVR 106
           PEETSNDQQDKNDTNKISRKTSRGFDLIECHMLPISQSTKSHGDSSSRNENIVECHNDVR
Sbjct: 47  PEETSNDQQDKNDTNKISRKTSRGFDLIECHMLPISQSTKSHGDSSSRNENIVECHNDVR 106

Query: 107 VCYKLPCEGSPKLNLV 122
           VCYKLPCEGSPKLNLV
Sbjct: 107 VCYKLPCEGSPKLNLV 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.128    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,552,413
Number of extensions: 82206
Number of successful extensions: 144
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)