BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0237200 Os03g0237200|Os03g0237200
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0237200 Conserved hypothetical protein 209 1e-54
Os02g0707766 85 5e-17
Os01g0713400 79 2e-15
>Os03g0237200 Conserved hypothetical protein
Length = 232
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/232 (53%), Positives = 124/232 (53%)
Query: 1 MAGCCSPNSKVESFIEHQDACNSGRVRGEVVPVATTLPVIRPAALRXXXXXXXXXXXELQ 60
MAGCCSPNSKVESFIEHQDACNSGRVRGEVVPVATTLPVIRPAALR ELQ
Sbjct: 1 MAGCCSPNSKVESFIEHQDACNSGRVRGEVVPVATTLPVIRPAALRHHHHHPPPPPPELQ 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXHEQHATTMTTTKLQLSIXXXXXXXXXXXXXXXXXX 120
HEQHATTMTTTKLQLSI
Sbjct: 61 LLPASTTAPLAAAFSSNSTTTGSSSHEQHATTMTTTKLQLSIGPAAVVAAASGGGGACAA 120
Query: 121 XXXXXXXXXXXXXXXXXXXKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKALA 180
KT KALA
Sbjct: 121 AAGGEEEQQREEVRRALEEKTAADAARERAREEAAAAERALEDARRARHRARGELEKALA 180
Query: 181 LRDHAARLIAQVTCHACRQRSLAVMSMAAIDGHGASAVAREHLRGGGVGAGI 232
LRDHAARLIAQVTCHACRQRSLAVMSMAAIDGHGASAVAREHLRGGGVGAGI
Sbjct: 181 LRDHAARLIAQVTCHACRQRSLAVMSMAAIDGHGASAVAREHLRGGGVGAGI 232
>Os02g0707766
Length = 233
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 11 VESFIEHQDACNSGRVRGEVVPVATTLPVIRPAALR-XXXXXXXXXXXELQXXX---XXX 66
VESFIEHQDACNSGRVRGEVVPV T LPVIRP LR ELQ
Sbjct: 6 VESFIEHQDACNSGRVRGEVVPVVTILPVIRPVTLRHHHHYPPPPPPPELQLLPASTTAS 65
Query: 67 XXXXXXXXXXXXXXXXXXXHEQHATTMTTTKLQLSI 102
HEQHA TMTTTKLQLSI
Sbjct: 66 LAAAFSSNSTTTTTTSSSSHEQHAMTMTTTKLQLSI 101
>Os01g0713400
Length = 195
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 18 QDACNSGRVRGEVVPVATTLPVIRPAALRXXXXXXXXXXXELQXXXXXXXXXXXXXXXXX 77
QDACNSGRVRGEV+PV TTLPVIRPAALR ELQ
Sbjct: 11 QDACNSGRVRGEVMPVVTTLPVIRPAALR-HHHHHPPPPPELQLLPASTTAPLAAAFSSN 69
Query: 78 XXXXXXXXHEQHATTMTTTKLQLSI 102
HEQHATTMTTTKLQL I
Sbjct: 70 STTTGSSSHEQHATTMTTTKLQLFI 94
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,952,405
Number of extensions: 115060
Number of successful extensions: 482
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 6
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)