BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0223900 Os03g0223900|AK066490
         (321 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0223900  UDP-3-0-acyl N-acetylglucosamine deacetylase f...   656   0.0  

>Os03g0223900 UDP-3-0-acyl N-acetylglucosamine deacetylase family protein
          Length = 321

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/321 (100%), Positives = 321/321 (100%)

Query: 1   MCGSAARALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRY 60
           MCGSAARALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRY
Sbjct: 1   MCGSAARALNSVSRAAFSWKPTGLPQQTLAAAVSRSGVGLHSGAKTTATLLPARAGEGRY 60

Query: 61  FVVEGEETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEVSGGD 120
           FVVEGEETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEVSGGD
Sbjct: 61  FVVEGEETRVAAEVANAEAHSPLCTALRRGGARVRTVEHLLSAMEALGVDNCRVEVSGGD 120

Query: 121 EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI 180
           EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI
Sbjct: 121 EIPLLDGSAQEWVMAIRGAGQCAAKDSSGQKLEKLAPEIHEPVYLQKSDCFIAALPSSRI 180

Query: 181 RITYGIDFPKVPGIGCQRFATVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLEN 240
           RITYGIDFPKVPGIGCQRFATVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLEN
Sbjct: 181 RITYGIDFPKVPGIGCQRFATVLDANVYSSKIAPARTFCIFEEVEKLRSAGLIRGGSLEN 240

Query: 241 ATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALHT 300
           ATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALHT
Sbjct: 241 ATVCSISGGWLNPPLRFEDEPCRHKILDLIGDFSLLAQNGNQGFPLAHVVAYKAGHALHT 300

Query: 301 DFLRHLLGRSAVGQENLAEQC 321
           DFLRHLLGRSAVGQENLAEQC
Sbjct: 301 DFLRHLLGRSAVGQENLAEQC 321



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,605,218
Number of extensions: 525690
Number of successful extensions: 1142
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1142
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 220
Effective length of database: 11,762,187
Effective search space: 2587681140
Effective search space used: 2587681140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)