BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0222500 Os03g0222500|Os03g0222500
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0222500 Conserved hypothetical protein 503 e-143
Os03g0222300 206 9e-54
Os12g0526500 66 2e-11
Os12g0521500 65 6e-11
>Os03g0222500 Conserved hypothetical protein
Length = 244
Score = 503 bits (1294), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MSRLDSARPEQVNEWLRYAVRRVVKTFWFNACDSTPIGAWWAPPPRDHGHQLPTVELPSY 60
MSRLDSARPEQVNEWLRYAVRRVVKTFWFNACDSTPIGAWWAPPPRDHGHQLPTVELPSY
Sbjct: 1 MSRLDSARPEQVNEWLRYAVRRVVKTFWFNACDSTPIGAWWAPPPRDHGHQLPTVELPSY 60
Query: 61 GRTASINLNLSSYPFRLKLPASPAARYEALTDLSLSSAWFGEDEAVAGRRTLGDFISSCC 120
GRTASINLNLSSYPFRLKLPASPAARYEALTDLSLSSAWFGEDEAVAGRRTLGDFISSCC
Sbjct: 61 GRTASINLNLSSYPFRLKLPASPAARYEALTDLSLSSAWFGEDEAVAGRRTLGDFISSCC 120
Query: 121 PRLRKLEIIDPMRLPQLVLRAEALEELIVASTRDTQTMDVTAPNLRIFELHYFNSMTSVT 180
PRLRKLEIIDPMRLPQLVLRAEALEELIVASTRDTQTMDVTAPNLRIFELHYFNSMTSVT
Sbjct: 121 PRLRKLEIIDPMRLPQLVLRAEALEELIVASTRDTQTMDVTAPNLRIFELHYFNSMTSVT 180
Query: 181 SYGESIDLVVRITAPRLEEIAINNSTLEIEDNLDLRIHGLASVRRLKNLTLAMHGHNCCN 240
SYGESIDLVVRITAPRLEEIAINNSTLEIEDNLDLRIHGLASVRRLKNLTLAMHGHNCCN
Sbjct: 181 SYGESIDLVVRITAPRLEEIAINNSTLEIEDNLDLRIHGLASVRRLKNLTLAMHGHNCCN 240
Query: 241 TDYG 244
TDYG
Sbjct: 241 TDYG 244
>Os03g0222300
Length = 449
Score = 206 bits (525), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 129/252 (51%), Positives = 159/252 (63%), Gaps = 29/252 (11%)
Query: 1 MSRLDSARPEQVNEWLRYAVRRVVKTFWFNACDSTPIGAWWAPPPRDHG--HQLPTVELP 58
MS SA +Q+N+WLRYA+RR VK F F ++ RD LP VELP
Sbjct: 96 MSYRKSATQDQINDWLRYAMRRAVKAFRF----------YYFSNARDGQDLQLLPIVELP 145
Query: 59 SYGRTASINLNLSSYPFRLKLPASPAARYEALTDLSLSSAWFGEDE-AVAGRRTLGDFIS 117
S+ RTASI L L S RL+LPASPAA YEALT+L+L A F E+E A AG RTLGDF+S
Sbjct: 146 SHARTASIVLFLGSS--RLRLPASPAACYEALTELNLRWASFDEEEGASAGGRTLGDFLS 203
Query: 118 SCCPRLRKLEIIDPMRLPQLVLRAEALEELIVASTRDTQTMDVTAPNLRIFELHYFNSMT 177
+CCPRLRKLE+ L +LVLR E+LEEL ++ D Q++DVTAPNLR+F H F
Sbjct: 204 TCCPRLRKLEMSSLKLLSRLVLRTESLEELRISYANDLQSLDVTAPNLRVFT-HTF---- 258
Query: 178 SVTSYGESID-----LVVRITAPRLEEIAINNSTLEIEDNLDLRIHGLASVRRLKNLTLA 232
YG ++D V++I APRLEEIA++N + DL IHGL SVRRL +L L
Sbjct: 259 --CWYGLTLDDINARSVIKIVAPRLEEIAMDNQVF--MNTPDLHIHGLKSVRRLCDLNLT 314
Query: 233 MHGHNCCNTDYG 244
+HG C N YG
Sbjct: 315 VHGQYCSNRGYG 326
>Os12g0526500
Length = 1838
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 54 TVELPSYGRTASINLNLSSYPFRLKLPASPAARYEALTDLSLSSAWFGEDEAVAGRRTLG 113
VELP+ R +++L L +P + A + ALTD +L A + R LG
Sbjct: 1461 AVELPATARATAMSLTLCDA--NTVVPIASAGAFRALTDFTLCRAKINAYDNDDLR--LG 1516
Query: 114 DFISS-CCPRLRKLEIIDPMRLPQLVLRAEA--LEELIVASTRDTQTMDVTAPNLRIFEL 170
+SS CCPRLR+LE+ L +L L A A LEEL + D + + V AP LR+ +
Sbjct: 1517 HLLSSPCCPRLRRLELRHVAGLIRLRLDAVAGTLEELRLVYLPDLRRLHVDAPGLRLLRV 1576
Query: 171 HYFNSMTSVTSYGESIDLVVRITAPRLEEIAINNSTLEIEDNLDLRIHGLASVRRLKNLT 230
+ +++ G R++APRLE +A + +E +VR LK L+
Sbjct: 1577 GHCDNLPYSDDPG-----AARVSAPRLETLAWDG----LEYRACREFIATPTVRHLKKLS 1627
Query: 231 LAMHG 235
L HG
Sbjct: 1628 LYSHG 1632
>Os12g0521500
Length = 567
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 57 LPSYGRTASINLNLSSYPFRLKLPASPAARYEALTDLSLSSAWFGEDEAVAGRRTLGDFI 116
LP R ++L L + +PA+ A + ALTD +L A R
Sbjct: 234 LPRSTRAEVMSLTLGYAT--VSVPATGA--FRALTDFTLHHAVLDAGSGDDDLRLGHLLS 289
Query: 117 SSCCPRLRKLEIIDPMRLPQLVLRAEA-LEELIVASTRDTQTMDVTAPNLRIFELHYFNS 175
SSCCPRLR+L + + L L A A LEEL + D Q +DV AP LR+ +
Sbjct: 290 SSCCPRLRRLSLRHVAGVATLRLDAAATLEELRLVHLPDLQWLDVDAPGLRLLRV----G 345
Query: 176 MTSVTSYGESIDLVVRITAPRLEEIAINNSTLEIEDNLDLRIHGLASVRRLKNLTLAMHG 235
S Y +S + I+APRLEE + + + D L +G A+VRR+KNL + G
Sbjct: 346 GCSRLPYSDSSAMA--ISAPRLEEFSCES----LVDPERLEFNGAAAVRRIKNLEIMSFG 399
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,515,078
Number of extensions: 345752
Number of successful extensions: 981
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 6
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)