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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0222500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0197) R2 : 0.000897
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0265 (0.0414) R2dN8 : 0.00116 R2N8 : 0.000897
σ : 0.371
deviance : 63.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.72 0.363 2.95 -0.0977 0.0159 -0.184 -0.382 1.03 0.0138 7.29 39.99 4362 -- --
61.3 0.365 2.94 -0.0675 0.0221 -0.204 -0.382 -- 0.022 7.35 49.9 4364 -- --
60.11 0.361 2.95 -0.104 0.0175 -0.183 -- 1.03 0.0135 7.29 39.99 4364 -- --
59.49 0.359 2.94 0.022 0.0106 -0.506 -- -- 0.0537 7.3 59.86 5861 -- --
60.12 0.361 2.95 -0.103 -- -0.186 -- 1.03 0.0149 -- 39.99 4364 -- --
62.31 0.37 2.96 -0.106 0.0214 -- -0.389 -- 0.0128 7.41 -- -- -- --
62.66 0.371 2.96 -0.113 0.0369 -- -- -- 0.0142 11.4 -- -- -- --
59.41 0.359 2.95 0.0708 -- -0.549 -- -- 0.0598 -- 59.17 5913 -- --
59.48 0.359 2.95 -- 0.0134 -0.509 -- -- 0.0732 7.25 59.13 5861 -- --
62.75 0.37 2.96 -0.114 -- -- -- -- 0.0138 -- -- -- -- --
63 0.371 2.96 -- 0.0381 -- -- -- 0.0268 11.6 -- -- -- --
59.45 0.359 2.95 -- -- -0.515 -- -- 0.0686 -- 58.24 5866 -- --
63.09 0.371 2.96 -- -- -- -- -- 0.0265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.21 radiation 1 90 < th dose independent rect. 8 1
4 50.21 radiation 1 90 < th dose dependent rect. 8 1
13 56.47 radiation 1 720 > th dose independent rect. 4 1
23 56.47 radiation 1 720 > th dose dependent rect. 4 1
33 56.65 humidity 80 720 < th dose independent rect. 23 1
35 56.74 humidity 80 720 < th dose dependent rect. 23 1
49 58.14 wind 9 1440 > th dose dependent rect. 15 1
54 58.22 wind 1 270 < th dose independent rect. 6 1
56 58.55 wind 7 1440 > th dose dependent rect. 18 1
57 58.56 humidity 60 14400 > th dose independent rect. 19 1
66 58.68 humidity 60 14400 < th dose independent rect. 19 1
67 58.69 humidity 60 14400 > th dose independent rect. 21 1
68 58.69 radiation 10 1440 < th dose independent rect. 18 11
70 58.73 wind 9 1440 > th dose independent rect. 15 2
72 58.77 humidity 60 14400 < th dose dependent rect. 19 2
91 58.79 radiation 10 1440 < th dose independent rect. 18 2
99 58.91 radiation 20 10 < th dose independent rect. 23 13
101 58.93 wind 9 1440 < th dose independent rect. 15 2
102 58.93 humidity 60 14400 > th dose independent rect. 19 7
106 58.94 humidity 60 14400 > th dose independent rect. 19 11
107 58.94 humidity 50 14400 < th dose dependent rect. 17 1
122 58.95 humidity 50 14400 < th dose independent rect. 17 1
139 58.96 radiation 20 10 < th dose independent rect. 23 11
140 58.96 radiation 10 1440 < th dose dependent rect. 18 11
147 59.00 radiation 10 1440 < th dose independent rect. 18 9
164 59.13 humidity 50 14400 > th dose independent rect. 17 1
167 59.17 humidity 80 720 > th dose independent rect. 22 8
169 59.19 radiation 1 1440 > th dose dependent rect. 18 1
188 59.24 wind 9 1440 < th dose independent rect. 15 4
194 59.30 radiation 30 4320 < th dose dependent rect. 11 1
199 59.34 wind 7 1440 > th dose independent rect. 18 1
204 59.37 radiation 20 10 < th dose independent sin 8 NA
208 59.40 radiation 40 4320 < th dose independent rect. 11 3
210 59.42 radiation 40 4320 < th dose independent rect. 12 1
214 59.43 radiation 1 4320 > th dose dependent rect. 11 4
216 59.43 radiation 40 4320 < th dose dependent rect. 11 4
220 59.45 radiation 30 4320 > th dose dependent rect. 12 2
221 59.45 radiation 1 4320 > th dose dependent rect. 13 2
228 59.46 radiation 30 1440 < th dose dependent rect. 18 3
232 59.47 radiation 40 4320 < th dose independent rect. 10 9
236 59.47 radiation 40 4320 < th dose independent rect. 10 17
237 59.47 radiation 40 4320 < th dose independent rect. 10 21
240 59.47 radiation 40 4320 < th dose dependent rect. 13 2
276 59.50 humidity 70 43200 > th dose independent rect. 12 1
297 59.53 radiation 1 4320 < th dose independent rect. 24 5
315 59.55 radiation 20 4320 > th dose independent rect. 11 4
321 59.55 radiation 10 4320 < th dose dependent rect. 24 5
337 59.56 radiation 10 270 < th dose independent rect. 21 11
359 59.57 humidity 90 14400 < th dose dependent rect. 19 1
384 59.58 radiation 20 10 < th dose independent rect. 23 21
385 59.58 humidity 70 14400 < th dose dependent rect. 17 1
390 59.59 humidity 80 720 > th dose independent rect. 23 1
392 59.59 radiation 30 4320 > th dose independent rect. 12 2
393 59.59 humidity 60 14400 > th dose independent rect. 24 7
395 59.59 humidity 60 14400 > th dose independent rect. 17 18
396 59.59 wind 1 270 < th dose dependent rect. 6 1
399 59.59 humidity 80 14400 < th dose dependent rect. 17 3
412 59.59 radiation 10 1440 < th dose dependent rect. 18 9
421 59.60 radiation 30 14400 < th dose independent rect. 17 4
430 59.60 atmosphere 995 30 > th dose dependent rect. 7 16
432 59.61 humidity 60 14400 > th dose independent sin 11 NA
436 59.61 radiation 40 4320 > th dose dependent sin 14 NA
446 59.62 radiation 40 4320 < th dose independent sin 17 NA
449 59.62 radiation 1 4320 > th dose independent rect. 4 1
467 59.62 humidity 70 14400 < th dose dependent rect. 21 1
468 59.62 radiation 1 4320 > th dose dependent rect. 4 1
543 59.65 wind 7 1440 < th dose independent rect. 18 1
547 59.65 radiation 10 720 < th dose independent rect. 22 9
562 59.66 radiation 20 4320 < th dose independent rect. 11 3
564 59.66 humidity 50 14400 > th dose independent rect. 17 10
587 59.66 humidity 80 14400 < th dose dependent rect. 17 15
593 59.66 humidity 70 14400 < th dose dependent rect. 14 18
597 59.67 humidity 60 14400 < th dose independent sin 11 NA
599 59.67 radiation 1 4320 < th dose independent rect. 4 1
601 59.67 humidity 80 720 > th dose independent rect. 22 3
602 59.67 humidity 90 10 < th dose independent rect. 20 3
603 59.67 atmosphere 1000 270 < th dose independent rect. 16 3
626 59.67 humidity 70 14400 < th dose dependent sin 12 NA
630 59.67 humidity 50 14400 > th dose dependent rect. 19 1
638 59.67 humidity 70 14400 < th dose dependent rect. 14 7
656 59.68 radiation 40 4320 > th dose independent sin 15 NA
750 59.69 radiation 20 4320 < th dose independent rect. 11 1
758 59.69 humidity 60 14400 < th dose independent rect. 15 20
760 59.69 radiation 10 4320 < th dose dependent rect. 4 1
787 59.70 humidity 60 14400 > th dose independent rect. 10 1
795 59.70 humidity 60 14400 > th dose independent rect. 15 17
838 59.71 humidity 90 270 < th dose independent rect. 7 1
934 59.72 humidity 60 14400 < th dose independent rect. 10 1
978 59.73 humidity 60 14400 > th dose independent rect. 4 3
979 59.73 humidity 70 14400 < th dose independent rect. 17 3
980 59.73 humidity 70 14400 < th dose independent rect. 17 5
987 59.73 atmosphere 1010 30 < th dose independent rect. 11 9