BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0221600 Os03g0221600|AK067131
         (480 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0221600  Conserved hypothetical protein                      476   e-134

>Os03g0221600 Conserved hypothetical protein
          Length = 480

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/345 (78%), Positives = 270/345 (78%)

Query: 1   MVVEQQQRPLHRRHLAXXXXXXXXXXXXXXGDEARQEQHHRRNDASKDYHXXXXXXXXXX 60
           MVVEQQQRPLHRRHLA              GDEARQEQHHRRNDASKDYH          
Sbjct: 1   MVVEQQQRPLHRRHLAPPTPHPQHRRHRHHGDEARQEQHHRRNDASKDYHRFLPRVLRRR 60

Query: 61  XXXXXVGDTEVKHRSGEARIALAILISRVGFHVDELAVPHEALRSVVNVGRAGAVDQAGV 120
                VGDTEVKHRSGEARIALAILISRVGFHVDELAVPHEALRSVVNVGRAGAVDQAGV
Sbjct: 61  RRNLRVGDTEVKHRSGEARIALAILISRVGFHVDELAVPHEALRSVVNVGRAGAVDQAGV 120

Query: 121 RARLVVPSSGRRLHGAIREPHGVRQRQEPVSVTLERVPPHAASGGVLQXXXXXXXXXEAG 180
           RARLVVPSSGRRLHGAIREPHGVRQRQEPVSVTLERVPPHAASGGVLQ         EAG
Sbjct: 121 RARLVVPSSGRRLHGAIREPHGVRQRQEPVSVTLERVPPHAASGGVLQPPLLRRPRLEAG 180

Query: 181 GAPALRVGGVAADSKGPARAVHVARVVGQRAEEDXXXXXXXXXXXXXXXXXXQHEVADGA 240
           GAPALRVGGVAADSKGPARAVHVARVVGQRAEED                  QHEVADGA
Sbjct: 181 GAPALRVGGVAADSKGPARAVHVARVVGQRAEEDPLPRRLAPLPPPHLPVHVQHEVADGA 240

Query: 241 RQPVAVAEEVDAGVRRVGDAGEVAGPHLRHVREDLAVPEAGRPVPVLAAGEEVELGQPAR 300
           RQPVAVAEEVDAGVRRVGDAGEVAGPHLRHVREDLAVPEAGRPVPVLAAGEEVELGQPAR
Sbjct: 241 RQPVAVAEEVDAGVRRVGDAGEVAGPHLRHVREDLAVPEAGRPVPVLAAGEEVELGQPAR 300

Query: 301 VDHHGERAGRRVLGXXXXXXXXXXXXXXXXXXXGSGEPCVGRVIK 345
           VDHHGERAGRRVLG                   GSGEPCVGRVIK
Sbjct: 301 VDHHGERAGRRVLGVRPRREEAVDAAAPVVAEPGSGEPCVGRVIK 345




 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 408 EQPQIAVDAQLEVAARRLKNRALTVGNPNNRLLGDLLVPDAKVVLVGLSRREEAELEVAA 467
           EQPQIAVDAQLEVAARRLKNRALTVGNPNNRLLGDLLVPDAKVVLVGLSRREEAELEVAA
Sbjct: 408 EQPQIAVDAQLEVAARRLKNRALTVGNPNNRLLGDLLVPDAKVVLVGLSRREEAELEVAA 467

Query: 468 IGDQRLVPQQRLA 480
           IGDQRLVPQQRLA
Sbjct: 468 IGDQRLVPQQRLA 480



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,539,754
Number of extensions: 497515
Number of successful extensions: 1242
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)