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Os03g0221600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.11 (0.0311) R2 : 0.673
β1 : 1.84 (0.116) R2dD : 0.195 R2D : 0.0178
β2 : 1.76 (0.0773) R2dC : 0.387 R2C : 0.235
β3 : 2.68 (0.15) R2dE : 0.264 R2E : -0.0779
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.978 (0.0682) R2dN8 : 0.213 R2N8 : 0.017
σ : 0.577
deviance : 153.36
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C
peak time of C : 2.56
E
wheather : temperature
threshold : 28.1
memory length : 51
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.82
open length of G : 15

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.51 0.58 6.11 1.9 1.79 2.54 -0.453 -0.981 0.977 2.52 28.84 40 4.72 15.1
153.32 0.577 6.12 1.85 1.76 2.66 -0.145 -- 0.962 2.58 28.24 50 4.82 15
152.94 0.576 6.11 1.87 1.78 2.55 -- -0.677 0.972 2.53 28.68 41 4.77 15.1
153.36 0.577 6.11 1.84 1.76 2.68 -- -- 0.978 2.56 28.1 51 4.82 15
294.4 0.799 6.1 1.78 -- 2.62 -- 0.781 1.03 -- 27.1 56 3.3 16.6
249.39 0.74 6.17 1.39 1.59 -- 0.26 -- 0.66 3.65 -- -- -- --
249.58 0.74 6.17 1.39 1.59 -- -- -- 0.658 3.68 -- -- -- --
290.73 0.794 6.09 1.88 -- 2.57 -- -- 1.08 -- 27.06 57 3.27 18.3
237.88 0.718 6.18 -- 1.88 2.28 -- -- 0.736 2.47 29.45 38 4.8 15
390.04 0.923 6.17 1.45 -- -- -- -- 0.701 -- -- -- -- --
300.16 0.81 6.2 -- 1.62 -- -- -- 0.504 3.67 -- -- -- --
324.79 0.839 6.16 -- -- 2.37 -- -- 0.902 -- 29.72 58 0.0318 23.8
445.63 0.985 6.21 -- -- -- -- -- 0.54 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.04 temperature 30 30 < th dose dependent rect. 5 15
4 159.03 temperature 15 90 > th dose dependent rect. 7 21
17 164.17 temperature 15 10 > th dose dependent rect. 8 20
21 164.99 temperature 15 10 > th dose dependent rect. 8 18
43 168.35 temperature 30 90 < th dose dependent rect. 4 19
59 169.84 temperature 25 10 < th dose dependent sin 22 NA
165 175.52 temperature 30 270 < th dose dependent rect. 1 20
201 177.79 temperature 30 90 < th dose dependent rect. 23 23
229 179.29 temperature 25 90 < th dose independent rect. 5 16
243 180.10 temperature 30 90 < th dose dependent rect. 11 22
265 180.84 temperature 30 30 < th dose dependent rect. 9 23
277 181.15 temperature 30 30 < th dose dependent rect. 13 23
295 181.70 temperature 15 10 > th dose dependent sin 0 NA
297 181.80 temperature 30 30 < th dose dependent rect. 15 23
300 181.91 temperature 30 30 < th dose dependent no NA NA
301 181.92 temperature 30 10 < th dose dependent rect. 1 23
343 182.75 temperature 30 30 < th dose dependent rect. 17 23
345 182.77 temperature 30 30 < th dose dependent rect. 21 23
361 183.27 temperature 15 90 > th dose dependent rect. 18 23
418 184.54 temperature 30 30 < th dose dependent rect. 19 23
438 184.98 temperature 25 90 < th dose independent rect. 4 19
454 185.31 temperature 25 270 < th dose independent rect. 2 19
542 187.47 temperature 15 90 > th dose dependent rect. 7 10
550 187.63 temperature 10 10 > th dose dependent no NA NA
678 190.05 temperature 30 90 < th dose dependent rect. 13 20
728 190.73 temperature 20 10 > th dose dependent rect. 20 21
741 190.88 temperature 20 10 > th dose dependent rect. 7 10
782 191.44 humidity 70 30 > th dose dependent rect. 5 15
814 191.99 temperature 25 90 > th dose independent rect. 7 20
859 192.63 radiation 10 270 > th dose independent rect. 16 22
882 192.94 temperature 25 90 > th dose independent rect. 7 17
883 192.94 temperature 30 90 < th dose dependent rect. 15 18
896 193.05 temperature 20 10 > th dose dependent rect. 3 23
975 194.11 temperature 20 10 > th dose dependent rect. 1 23