BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0213200 Os03g0213200|Os03g0213200
         (271 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0213200  Hypothetical protein                                451   e-127

>Os03g0213200 Hypothetical protein
          Length = 271

 Score =  451 bits (1161), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/247 (90%), Positives = 223/247 (90%)

Query: 25  LRQWRPAAQRNLRNQWSRLLAAKARYMPGMDLGVLKDMPGIREKASGKLARREEQCQSML 84
           LRQWRPAAQRNLRNQWSRLLAAKARYMPGMDLGVLKDMPGIREKASGKLARREEQCQSML
Sbjct: 25  LRQWRPAAQRNLRNQWSRLLAAKARYMPGMDLGVLKDMPGIREKASGKLARREEQCQSML 84

Query: 85  LSAYREMVLATAELVRASHSMRCFSKVAANSPLIRFTERQXXXXXXXXXXXXPVFKWFSV 144
           LSAYREMVLATAELVRASHSMRCFSKVAANSPLIRFTERQ            PVFKWFSV
Sbjct: 85  LSAYREMVLATAELVRASHSMRCFSKVAANSPLIRFTERQDDMNDSGDGGGSPVFKWFSV 144

Query: 145 LEFENLAQELVDMFISEXXXXXXXXXXXXSVTFKEGVQHDASLEWSNELFDGEFNEFQSI 204
           LEFENLAQELVDMFISE            SVTFKEGVQHDASLEWSNELFDGEFNEFQSI
Sbjct: 145 LEFENLAQELVDMFISELQLKRLLVLELLSVTFKEGVQHDASLEWSNELFDGEFNEFQSI 204

Query: 205 GLLSGDSYALPKNWSAGVSKAWQPDQTPSHEVLQVYLTSWLANVNIKTSRIDEIFELVGE 264
           GLLSGDSYALPKNWSAGVSKAWQPDQTPSHEVLQVYLTSWLANVNIKTSRIDEIFELVGE
Sbjct: 205 GLLSGDSYALPKNWSAGVSKAWQPDQTPSHEVLQVYLTSWLANVNIKTSRIDEIFELVGE 264

Query: 265 EMQIKLS 271
           EMQIKLS
Sbjct: 265 EMQIKLS 271



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,991,750
Number of extensions: 233374
Number of successful extensions: 445
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 172
Effective length of database: 11,866,615
Effective search space: 2041057780
Effective search space used: 2041057780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)