BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0193700 Os03g0193700|Os03g0193700
(149 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0193700 Terpenoid cylases/protein prenyltransferase al... 210 3e-55
Os11g0523500 158 2e-39
Os08g0512300 Similar to Rab geranylgeranyl transferase beta... 106 6e-24
>Os03g0193700 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid
domain containing protein
Length = 149
Score = 210 bits (535), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/149 (78%), Positives = 117/149 (78%)
Query: 1 MAGTAAQPGRVLRSSPAFKQMGIDGSWRCRXXXXXXXXXXXXXXXXKHVRYIVTVEKVGR 60
MAGTAAQPGRVLRSSPAFKQMGIDGSWRCR KHVRYIVTVEKVGR
Sbjct: 1 MAGTAAQPGRVLRSSPAFKQMGIDGSWRCRSASGSLSLGLGELAAEKHVRYIVTVEKVGR 60
Query: 61 LSLGCELLDXXXXXXXXXXXXXXXXVMQKDSFESLVMEHIRLNGAYWGLTTLDLLHKLHA 120
LSLGCELLD VMQKDSFESLVMEHIRLNGAYWGLTTLDLLHKLHA
Sbjct: 61 LSLGCELLDAAADSDWMLFAAAAAAVMQKDSFESLVMEHIRLNGAYWGLTTLDLLHKLHA 120
Query: 121 VEADEFIGWIMSCYHPDSGSARRGGGGID 149
VEADEFIGWIMSCYHPDSGSARRGGGGID
Sbjct: 121 VEADEFIGWIMSCYHPDSGSARRGGGGID 149
>Os11g0523500
Length = 187
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 83/105 (79%), Gaps = 3/105 (2%)
Query: 47 KHVRYIVTVEKVGRLSLGCELLDXXXXXXXXXXXXXXXXVMQKDSFESLVMEHIRLNGAY 106
KHVRYIVT+EKVGRLSLGCELLD + +KDSFESLVMEHIRLNGAY
Sbjct: 9 KHVRYIVTMEKVGRLSLGCELLDAAADSDWMLFAAAAAVMQKKDSFESLVMEHIRLNGAY 68
Query: 107 WGLTTLDLLHKLHAVEADEFIGWIMSCYHPDSGSARRG---GGGI 148
WGLTTLDLLHKLHAVEADEFI WIMSCYHPDSGSARRG GG +
Sbjct: 69 WGLTTLDLLHKLHAVEADEFIEWIMSCYHPDSGSARRGVDWGGNV 113
>Os08g0512300 Similar to Rab geranylgeranyl transferase beta subunit (Fragment)
Length = 319
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 60/93 (64%), Gaps = 30/93 (32%)
Query: 47 KHVRYIVTVEKVGRLSLGCELLDXXXXXXXXXXXXXXXXVMQKDSFESLVMEHIRLNGAY 106
KHVRYIVTVEK +KDSFESLVMEHIRLNGAY
Sbjct: 11 KHVRYIVTVEK------------------------------RKDSFESLVMEHIRLNGAY 40
Query: 107 WGLTTLDLLHKLHAVEADEFIGWIMSCYHPDSG 139
WGLTTLDLLHKL AVEADE I WIMSCYHP+SG
Sbjct: 41 WGLTTLDLLHKLRAVEADEVIEWIMSCYHPESG 73
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,263,939
Number of extensions: 121555
Number of successful extensions: 304
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 3
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)