BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0180100 Os03g0180100|AK108326
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0180100  Protein of unknown function DUF1677, plant fam...    75   1e-14

>Os03g0180100 Protein of unknown function DUF1677, plant family protein
          Length = 141

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 51/141 (36%)

Query: 1   MSXXXXXXXGQEVNPGXXXXXXXXXXXXXXXXXGLREECTPTYAAGVRARYGGRWLCGLC 60
           MS       GQEVNPG                 GLREECTPTYAAGVRARYGGRWLCGLC
Sbjct: 1   MSAAAAAAAGQEVNPGVVVAAVVEVEWAECACCGLREECTPTYAAGVRARYGGRWLCGLC 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGCRSPXXXXXXXXXXXXXXXX 120
                                                 LGCRSP                
Sbjct: 61  GEAVGEELAAAGGGAGDDGSVVVEVEAAIARHAAFCRALGCRSPAAAERLIAAVRRLLRG 120

Query: 121 XXXXXXXXXXXXVVVLEFHDA 141
                       VVVLEFHDA
Sbjct: 121 AGEGGRKEKAKAVVVLEFHDA 141



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.143    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,791,732
Number of extensions: 26429
Number of successful extensions: 62
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)