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Os03g0180100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0282) R2 : 0.538
β1 : -1.5 (0.105) R2dD : 0.233 R2D : 0.169
β2 : 1.04 (0.0705) R2dC : 0.228 R2C : 0.228
β3 : -1.22 (0.117) R2dE : 0.136 R2E : 0.0776
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0125 (0.0639) R2dN8 : 4.37e-05 R2N8 : 0.00166
σ : 0.519
deviance : 122.69
__
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C
peak time of C : 7.83
E
wheather : temperature
threshold : 27.64
memory length : 20
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.92 0.508 11.1 -1.8 1.06 -1.17 -0.38 1.82 -0.0597 7.92 28.13 27 -- --
121.78 0.518 11.1 -1.47 1.04 -1.18 -0.578 -- 0.0226 7.98 27.64 20 -- --
117.29 0.504 11.1 -1.82 1.05 -1.18 -- 1.86 -0.0656 7.88 28.1 23 -- --
122.69 0.519 11.1 -1.5 1.04 -1.22 -- -- 0.0125 7.83 27.64 20 -- --
175.17 0.62 11.1 -1.75 -- -1.28 -- 1.54 -0.0377 -- 25.18 16 -- --
141.96 0.559 11 -1.18 1.09 -- -0.82 -- 0.28 9.25 -- -- -- --
144.32 0.563 11 -1.21 1.09 -- -- -- 0.278 9.17 -- -- -- --
179.43 0.627 11.1 -1.52 -- -1.38 -- -- 0.012 -- 25.18 16 -- --
176.42 0.622 11 -- 1.04 -0.632 -- -- 0.292 8.59 27.64 20 -- --
213.31 0.682 11.1 -1.21 -- -- -- -- 0.284 -- -- -- -- --
182.79 0.632 11 -- 1.09 -- -- -- 0.413 9.25 -- -- -- --
235.94 0.718 11.1 -- -- -0.909 -- -- 0.255 -- 25.5 3 -- --
252.02 0.741 11 -- -- -- -- -- 0.418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.27 temperature 30 10 < th dose dependent rect. 7 21
2 109.39 humidity 70 90 > th dose dependent rect. 10 17
9 111.09 temperature 15 10 > th dose dependent rect. 4 17
10 111.12 humidity 70 90 > th dose dependent rect. 7 20
11 111.21 humidity 70 10 > th dose dependent rect. 7 21
13 111.58 humidity 70 10 > th dose dependent rect. 10 18
47 113.19 wind 9 43200 > th dose dependent rect. 17 2
60 113.33 radiation 1 270 < th dose independent rect. 5 21
64 113.42 radiation 1 270 < th dose dependent rect. 5 20
84 113.79 temperature 10 270 > th dose dependent rect. 24 21
106 114.20 wind 9 43200 > th dose dependent rect. 16 5
145 114.88 wind 9 43200 < th dose independent rect. 17 2
152 114.92 temperature 15 10 > th dose dependent rect. 24 22
176 115.24 wind 9 43200 > th dose independent rect. 17 2
192 115.35 temperature 10 43200 > th dose independent rect. 8 8
218 115.57 wind 9 43200 < th dose independent rect. 17 5
228 115.67 humidity 50 270 > th dose dependent rect. 5 21
236 115.74 temperature 10 90 > th dose dependent sin 18 NA
242 115.77 temperature 30 90 < th dose dependent rect. 11 16
247 115.80 wind 9 43200 > th dose dependent rect. 15 9
249 115.84 wind 9 43200 > th dose dependent rect. 15 13
279 116.08 temperature 10 270 > th dose dependent rect. 13 16
281 116.09 temperature 15 1440 > th dose independent rect. 8 8
322 116.30 temperature 10 270 > th dose dependent rect. 10 23
328 116.33 wind 9 43200 > th dose independent rect. 20 1
329 116.33 wind 9 43200 < th dose independent rect. 20 1
331 116.36 temperature 15 270 > th dose dependent rect. 11 10
351 116.50 wind 9 43200 > th dose independent rect. 17 5
353 116.51 humidity 60 90 > th dose dependent sin 17 NA
378 116.66 wind 7 43200 > th dose dependent rect. 20 1
399 116.75 humidity 60 90 > th dose dependent rect. 17 10
407 116.82 humidity 60 10 > th dose dependent sin 16 NA
422 116.90 wind 9 43200 > th dose independent rect. 16 8
425 116.90 temperature 30 10 < th dose dependent rect. 18 22
439 117.00 wind 9 43200 > th dose independent rect. 16 12
449 117.02 temperature 10 1440 > th dose dependent rect. 11 1
475 117.11 radiation 10 1440 > th dose independent rect. 10 2
533 117.37 wind 9 43200 < th dose independent rect. 16 8
539 117.38 temperature 15 1440 > th dose dependent rect. 11 3
551 117.42 temperature 15 1440 > th dose dependent rect. 13 1
555 117.43 atmosphere 1015 1440 < th dose independent rect. 3 5
591 117.54 temperature 15 90 > th dose independent rect. 3 16
635 117.70 wind 9 43200 < th dose independent rect. 16 12
693 117.90 radiation 10 1440 < th dose dependent rect. 9 16
694 117.90 radiation 10 1440 < th dose dependent rect. 9 19
720 117.97 temperature 30 10 < th dose dependent sin 16 NA
739 118.01 radiation 10 1440 < th dose dependent rect. 15 2
741 118.01 radiation 10 1440 < th dose dependent rect. 9 10
742 118.01 radiation 10 1440 < th dose dependent rect. 9 12
798 118.18 temperature 30 30 < th dose dependent rect. 21 23
799 118.19 temperature 30 30 < th dose dependent no NA NA
816 118.22 temperature 15 10 > th dose dependent rect. 13 23
828 118.26 radiation 10 1440 > th dose independent rect. 9 22
884 118.40 temperature 30 30 < th dose dependent rect. 15 23
901 118.45 humidity 90 270 < th dose dependent rect. 11 10
909 118.46 temperature 30 30 < th dose dependent rect. 11 23
911 118.47 temperature 25 10 < th dose independent rect. 6 22
953 118.55 temperature 30 30 < th dose dependent rect. 13 23
954 118.56 atmosphere 1015 1440 < th dose independent rect. 3 7
980 118.61 temperature 30 30 < th dose dependent rect. 9 23