BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0177100 Os03g0177100|AK068092
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0177100  Conserved hypothetical protein                      184   3e-47
Os09g0357250  Conserved hypothetical protein                      152   2e-37

>Os03g0177100 Conserved hypothetical protein
          Length = 190

 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 103/156 (66%)

Query: 35  CLCXXXXXXXXXXXXXXXXXDAAAVASPRXXXXXXXXXXXXXXXRQPATLPRPSRQSSIH 94
           CLC                 DAAAVASPR               RQPATLPRPSRQSSIH
Sbjct: 35  CLCRRRPSPPTASRSTPPLPDAAAVASPRPIPDAAATHADAPTPRQPATLPRPSRQSSIH 94

Query: 95  IYDRRLSPPRALLTADPHPHRGQPRKPATTSSAGAADXXXXXXXXXXXXXXXXXXXXXTA 154
           IYDRRLSPPRALLTADPHPHRGQPRKPATTSSAGAAD                     TA
Sbjct: 95  IYDRRLSPPRALLTADPHPHRGQPRKPATTSSAGAADSLRRPHRRSTPRRLSPPRSLPTA 154

Query: 155 DPQRGQPNHIHTAVPGGEPPTTRICDFRLGIQLKCS 190
           DPQRGQPNHIHTAVPGGEPPTTRICDFRLGIQLKCS
Sbjct: 155 DPQRGQPNHIHTAVPGGEPPTTRICDFRLGIQLKCS 190



>Os09g0357250 Conserved hypothetical protein
          Length = 270

 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 80/101 (79%)

Query: 82  ATLPRPSRQSSIHIYDRRLSPPRALLTADPHPHRGQPRKPATTSSAGAADXXXXXXXXXX 141
           ATLPRPSRQSSIHIYDRRLSPPRALLTADPHPHRGQPRKPATTSSAGAAD          
Sbjct: 106 ATLPRPSRQSSIHIYDRRLSPPRALLTADPHPHRGQPRKPATTSSAGAADSLRRPHRRST 165

Query: 142 XXXXXXXXXXXTADPQRGQPNHIHTAVPGGEPPTTRICDFR 182
                      TADPQRGQPNHIHTAVPGGEPPTTRICDFR
Sbjct: 166 PRRLSPPRSLPTADPQRGQPNHIHTAVPGGEPPTTRICDFR 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,781,089
Number of extensions: 183271
Number of successful extensions: 646
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)