Os03g0177100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0177100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.11 | 0.305 | 11.3 | -1.29 | 0.555 | -1.34 | 0.393 | -0.467 | 0.0427 | 5.8 | 27.11 | 3 | -- | -- |
| 42.35 | 0.305 | 11.3 | -1.36 | 0.557 | -1.3 | 0.304 | -- | 0.0286 | 5.88 | 27.37 | 2 | -- | -- |
| 42.34 | 0.305 | 11.3 | -1.29 | 0.551 | -1.3 | -- | -0.372 | 0.0457 | 6.03 | 27.09 | 2 | -- | -- |
| 42.56 | 0.306 | 11.3 | -1.35 | 0.554 | -1.28 | -- | -- | 0.0318 | 6.02 | 27.3 | 2 | -- | -- |
| 53.92 | 0.344 | 11.3 | -1.23 | -- | -1.32 | -- | -0.704 | 0.128 | -- | 24.2 | 10 | -- | -- |
| 66.41 | 0.382 | 11.3 | -1.04 | 0.496 | -- | -0.176 | -- | 0.312 | 8.87 | -- | -- | -- | -- |
| 66.52 | 0.382 | 11.3 | -1.05 | 0.497 | -- | -- | -- | 0.311 | 8.83 | -- | -- | -- | -- |
| 54.71 | 0.346 | 11.3 | -1.33 | -- | -1.25 | -- | -- | 0.0988 | -- | 24.46 | 2 | -- | -- |
| 86.33 | 0.433 | 11.3 | -- | 0.475 | -0.747 | -- | -- | 0.287 | 7.51 | 26.22 | 2 | -- | -- |
| 80.58 | 0.419 | 11.3 | -1.05 | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
| 95.56 | 0.457 | 11.2 | -- | 0.495 | -- | -- | -- | 0.428 | 8.98 | -- | -- | -- | -- |
| 97.72 | 0.462 | 11.3 | -- | -- | -0.782 | -- | -- | 0.291 | -- | 25.5 | 2 | -- | -- |
| 109.63 | 0.489 | 11.3 | -- | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 3 | 42.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 4 | 42.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 7 | 43.02 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 25 | 43.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 27 | 43.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 33 | 43.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 37 | 43.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 42 | 43.41 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 45 | 43.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 50 | 43.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 55 | 43.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 57 | 43.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 64 | 43.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 66 | 43.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 67 | 43.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 70 | 43.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 118 | 43.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 148 | 44.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 150 | 44.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 151 | 44.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 163 | 44.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 171 | 44.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 181 | 44.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 205 | 44.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 255 | 44.22 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 583 | 44.61 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 720 | 44.79 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 827 | 44.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 828 | 44.88 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 856 | 44.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 857 | 44.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 901 | 44.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |