BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0170500 Os03g0170500|Os03g0170500
         (296 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0170500  Conserved hypothetical protein                      415   e-116

>Os03g0170500 Conserved hypothetical protein
          Length = 296

 Score =  415 bits (1067), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/234 (87%), Positives = 205/234 (87%)

Query: 63  ETVFFDGGAHYGDXXXXXXXXXXXXXXXXXXXXVSRAFILRYRFTSRRVSVISGLSGADR 122
           ETVFFDGGAHYGD                    VSRAFILRYRFTSRRVSVISGLSGADR
Sbjct: 63  ETVFFDGGAHYGDLAANLALGLTLLWLPLTLAAVSRAFILRYRFTSRRVSVISGLSGADR 122

Query: 123 TDFPYXXXXXXXXXPRFIGEWGDIVITLKDGTKVDLRSVPRFREVADYCRSMAAAEGSLA 182
           TDFPY         PRFIGEWGDIVITLKDGTKVDLRSVPRFREVADYCRSMAAAEGSLA
Sbjct: 123 TDFPYSSVTSVVVVPRFIGEWGDIVITLKDGTKVDLRSVPRFREVADYCRSMAAAEGSLA 182

Query: 183 ASTYYNGVIRSWDRWALDLPLSAPCSVQSSEENFFQETDRPFLKNRPNTMHVQAAFRSST 242
           ASTYYNGVIRSWDRWALDLPLSAPCSVQSSEENFFQETDRPFLKNRPNTMHVQAAFRSST
Sbjct: 183 ASTYYNGVIRSWDRWALDLPLSAPCSVQSSEENFFQETDRPFLKNRPNTMHVQAAFRSST 242

Query: 243 LTAKSGSYNSSRLVFLQWWIRRVLEVRMQCICENKTEAAATKKRSVRSNNVHQP 296
           LTAKSGSYNSSRLVFLQWWIRRVLEVRMQCICENKTEAAATKKRSVRSNNVHQP
Sbjct: 243 LTAKSGSYNSSRLVFLQWWIRRVLEVRMQCICENKTEAAATKKRSVRSNNVHQP 296



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,034,079
Number of extensions: 236832
Number of successful extensions: 436
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)