Os03g0170500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0170500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.56 | 0.392 | 12.9 | 0.0274 | 1.38 | -0.844 | 1.02 | 0.508 | -0.26 | 6.5 | 20.6 | 2008 | -- | -- |
| 70.19 | 0.39 | 12.9 | -0.0543 | 1.39 | -0.889 | 1.12 | -- | -0.283 | 6.49 | 20.7 | 1999 | -- | -- |
| 72.13 | 0.396 | 12.9 | 0.025 | 1.38 | -0.869 | -- | 0.412 | -0.27 | 6.43 | 20.62 | 2010 | -- | -- |
| 72.44 | 0.396 | 12.9 | -0.0405 | 1.38 | -0.953 | -- | -- | -0.289 | 6.42 | 20.3 | 2008 | -- | -- |
| 170.83 | 0.609 | 13 | 0.0428 | -- | -0.907 | -- | 0.218 | -0.212 | -- | 21.3 | 2040 | -- | -- |
| 88.62 | 0.441 | 13 | -0.497 | 1.4 | -- | 1.11 | -- | -0.509 | 6.58 | -- | -- | -- | -- |
| 91.67 | 0.448 | 13 | -0.482 | 1.41 | -- | -- | -- | -0.513 | 6.52 | -- | -- | -- | -- |
| 170.92 | 0.609 | 13 | 0.0269 | -- | -0.955 | -- | -- | -0.206 | -- | 21.28 | 2050 | -- | -- |
| 72.48 | 0.397 | 12.9 | -- | 1.38 | -0.968 | -- | -- | -0.284 | 6.41 | 20.3 | 2010 | -- | -- |
| 194.49 | 0.652 | 13 | -0.447 | -- | -- | -- | -- | -0.484 | -- | -- | -- | -- | -- |
| 97.79 | 0.463 | 13 | -- | 1.4 | -- | -- | -- | -0.459 | 6.54 | -- | -- | -- | -- |
| 163.41 | 0.595 | 13 | -- | -- | -0.931 | -- | -- | -0.22 | -- | 21.28 | 570 | -- | -- |
| 199.76 | 0.66 | 13 | -- | -- | -- | -- | -- | -0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 2 | 68.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 3 | 68.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 4 | 68.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 10 | 68.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 26 | 68.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 34 | 68.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 35 | 68.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 39 | 68.65 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 43 | 68.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 63 | 68.76 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 66 | 68.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 78 | 68.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 83 | 68.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 99 | 68.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 142 | 69.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 205 | 69.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 382 | 70.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 403 | 70.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 616 | 70.61 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 633 | 70.64 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 647 | 70.68 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 682 | 70.77 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 694 | 70.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 759 | 70.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 781 | 70.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 826 | 71.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 840 | 71.12 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |