BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0168900 Os03g0168900|AK121913
         (113 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0168900  Ribosomal L32p protein family protein               135   7e-33
Os10g0407100  Ribosomal L32p protein family protein               101   9e-23

>Os03g0168900 Ribosomal L32p protein family protein
          Length = 113

 Score =  135 bits (340), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 68/77 (88%)

Query: 37  EAQSFVLPGIGTAVAGGMDLMAVPXXXXXXXXXGLRNGPKALKPVPVIVRCRCCGRVKLP 96
           EAQSFVLPGIGTAVAGGMDLMAVP         GLRNGPKALKPVPVIVRCRCCGRVKLP
Sbjct: 37  EAQSFVLPGIGTAVAGGMDLMAVPKKKVSKYKKGLRNGPKALKPVPVIVRCRCCGRVKLP 96

Query: 97  HFYCCSGEKGNPGDSSS 113
           HFYCCSGEKGNPGDSSS
Sbjct: 97  HFYCCSGEKGNPGDSSS 113



>Os10g0407100 Ribosomal L32p protein family protein
          Length = 117

 Score =  101 bits (252), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 57/78 (73%), Gaps = 3/78 (3%)

Query: 36  TEAQSFVLPGIGTAVAGGMDLMAVPXXXXXXXXXGLRNGPKALKPVPVIVRCRCCGRVKL 95
           +EA +  LP   +  A  M+LMAVP         GLRNGPKALKPVPVIVRC+CCGRVKL
Sbjct: 43  SEAPALALP---SHAAVAMELMAVPKKKVSKYKKGLRNGPKALKPVPVIVRCKCCGRVKL 99

Query: 96  PHFYCCSGEKGNPGDSSS 113
           PHFYCCSGE+GNPG  SS
Sbjct: 100 PHFYCCSGERGNPGSESS 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.141    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,833,643
Number of extensions: 93398
Number of successful extensions: 137
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)