Os03g0168900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal L32p protein family protein.
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Os03g0168900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal L32p protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.83 | 0.187 | 11.3 | 0.248 | 0.518 | -0.674 | 0.651 | -0.524 | 0.0952 | 22.5 | 26.4 | 71 | -- | -- |
| 16.2 | 0.187 | 11.3 | 0.167 | 0.518 | -0.615 | 0.508 | -- | 0.08 | 22.3 | 26.4 | 62 | -- | -- |
| 17.24 | 0.193 | 11.3 | 0.166 | 0.511 | -0.63 | -- | -0.107 | 0.085 | 22.3 | 26.29 | 69 | -- | -- |
| 17.26 | 0.194 | 11.3 | 0.147 | 0.51 | -0.617 | -- | -- | 0.0814 | 22.2 | 26.28 | 67 | -- | -- |
| 23.18 | 0.224 | 11.3 | 0.286 | -- | -0.811 | -- | -1.08 | 0.141 | -- | 53.17 | 727 | -- | -- |
| 21.96 | 0.22 | 11.3 | 0.314 | 0.458 | -- | 0.465 | -- | 0.217 | 21.3 | -- | -- | -- | -- |
| 22.71 | 0.223 | 11.3 | 0.298 | 0.459 | -- | -- | -- | 0.217 | 21.1 | -- | -- | -- | -- |
| 24.1 | 0.229 | 11.3 | 0.092 | -- | -0.83 | -- | -- | 0.0891 | -- | 39.49 | 705 | -- | -- |
| 17.78 | 0.196 | 11.3 | -- | 0.513 | -0.672 | -- | -- | 0.0539 | 22.4 | 26.32 | 70 | -- | -- |
| 34.86 | 0.276 | 11.3 | 0.299 | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
| 25.04 | 0.234 | 11.3 | -- | 0.459 | -- | -- | -- | 0.184 | 21.2 | -- | -- | -- | -- |
| 24.3 | 0.23 | 11.3 | -- | -- | -0.864 | -- | -- | 0.0747 | -- | 55.27 | 714 | -- | -- |
| 37.21 | 0.285 | 11.3 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 2 | 14.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 51 | 15.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 65 | 15.49 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 71 | 15.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 97 | 15.65 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 113 | 15.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 126 | 15.82 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 164 | 15.96 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 181 | 16.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 196 | 16.04 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 235 | 16.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 250 | 16.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 254 | 16.16 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 271 | 16.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 272 | 16.17 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 274 | 16.18 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 283 | 16.18 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 284 | 16.18 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 302 | 16.20 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 303 | 16.20 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 321 | 16.22 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 336 | 16.24 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 400 | 16.30 | temperature | 15 | 720 | > th | dose dependent | sin | 19 | NA |
| 437 | 16.34 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 442 | 16.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 448 | 16.35 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 471 | 16.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 549 | 16.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 563 | 16.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 569 | 16.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 571 | 16.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 596 | 16.49 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 19 |
| 597 | 16.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 599 | 16.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 609 | 16.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 635 | 16.52 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 648 | 16.52 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 649 | 16.52 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 667 | 16.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 688 | 16.56 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 757 | 16.60 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 790 | 16.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 848 | 16.66 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 928 | 16.69 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |