BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0160900 Os03g0160900|J065132L03
(217 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0160900 Hypothetical protein 396 e-111
Os12g0482300 167 6e-42
Os12g0481900 166 8e-42
Os11g0638500 161 4e-40
Os12g0481500 150 6e-37
Os10g0351000 101 4e-22
Os11g0638600 97 8e-21
Os08g0528400 77 9e-15
>Os03g0160900 Hypothetical protein
Length = 217
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/217 (89%), Positives = 195/217 (89%)
Query: 1 MDSPATNQSVEDKAPAIDPSERHPLEEDKASVMDLSGKGKALVVDPSDLGVCRTEVKIPA 60
MDSPATNQSVEDKAPAIDPSERHPLEEDKASVMDLSGKGKALVVDPSDLGVCRTEVKIPA
Sbjct: 1 MDSPATNQSVEDKAPAIDPSERHPLEEDKASVMDLSGKGKALVVDPSDLGVCRTEVKIPA 60
Query: 61 SAVNPSGEGKAPMEXXXXXXXXXXMARFTQAQINNCMAFKEEMPDFDNMPSIIEILGDDL 120
SAVNPSGEGKAPME MARFTQAQINNCMAFKEEMPDFDNMPSIIEILGDDL
Sbjct: 61 SAVNPSGEGKAPMEKKKKKKTKTKMARFTQAQINNCMAFKEEMPDFDNMPSIIEILGDDL 120
Query: 121 AKCSQEYIDELKAIDDSREEDKKFWIEMNRQIREEREGILNQYYTKGYAXXXXXXXXXXX 180
AKCSQEYIDELKAIDDSREEDKKFWIEMNRQIREEREGILNQYYTKGYA
Sbjct: 121 AKCSQEYIDELKAIDDSREEDKKFWIEMNRQIREEREGILNQYYTKGYAEYEVDDDEDED 180
Query: 181 XGNKGHARVAATSGRRRFRHGVALKKNQSGGGSIRKI 217
GNKGHARVAATSGRRRFRHGVALKKNQSGGGSIRKI
Sbjct: 181 EGNKGHARVAATSGRRRFRHGVALKKNQSGGGSIRKI 217
>Os12g0482300
Length = 215
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 124/204 (60%), Gaps = 23/204 (11%)
Query: 17 IDPSERHPLEEDKASVMDLSGKGKALVVDPSDLGVCRTEVKIPASAVNPSGEGKAPM--- 73
+DPS +P EE KA MD SG+GKALV+ P AVNPSGEG+AP+
Sbjct: 1 MDPSAMNPSEEGKALGMDPSGQGKALVIQP---------------AVNPSGEGEAPVMEE 45
Query: 74 ---EXXXXXXXXXXMARFTQAQINNCMAFKE-EMPDFDNMPSIIEILGDD-LAKCSQEYI 128
+ RFTQ QINNC+A+K+ E+P DNMPS++E LG++ LA Q+ I
Sbjct: 46 KKKKKTTTTKKKTKTMRFTQEQINNCIAYKDVEIPFNDNMPSLLEALGEETLANFPQDLI 105
Query: 129 DELKAIDDSREEDKKFWIEMNRQIREEREGILNQYYTKGYAXXXXXXXXXXXXGNKGHAR 188
D+LKA +D RE +K +IE+ IR ER+GILNQYYTKGYA +K R
Sbjct: 106 DKLKAYEDEREAEKASFIEIQNHIRGERDGILNQYYTKGYAEYEVVVDDDGEEDSKVPPR 165
Query: 189 VAATSGRRRFRHGVALKKNQSGGG 212
+ A GRRRFR+GV +KKNQSGGG
Sbjct: 166 IVAPPGRRRFRNGVTVKKNQSGGG 189
>Os12g0481900
Length = 228
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 124/204 (60%), Gaps = 23/204 (11%)
Query: 17 IDPSERHPLEEDKASVMDLSGKGKALVVDPSDLGVCRTEVKIPASAVNPSGEGKAPM--- 73
+DPS +P EE KA MD SG+GKALV+ P AVNPSGEG+AP+
Sbjct: 1 MDPSAMNPSEEGKALGMDPSGQGKALVIQP---------------AVNPSGEGEAPVMEE 45
Query: 74 ---EXXXXXXXXXXMARFTQAQINNCMAFKE-EMPDFDNMPSIIEILGDD-LAKCSQEYI 128
+ RFTQ QINNC+A+K+ E+P DNMPS++E LG++ LA Q+ I
Sbjct: 46 KKKKKTTTTKKKTKTMRFTQEQINNCIAYKDVEIPFNDNMPSLLEALGEETLANFPQDLI 105
Query: 129 DELKAIDDSREEDKKFWIEMNRQIREEREGILNQYYTKGYAXXXXXXXXXXXXGNKGHAR 188
D+LKA +D RE +K +IE+ IR ER+GILNQYYTKGYA +K R
Sbjct: 106 DKLKAYEDEREAEKASFIEIQNHIRGERDGILNQYYTKGYAEYEVVVDDDGEEDSKVPPR 165
Query: 189 VAATSGRRRFRHGVALKKNQSGGG 212
+ A GRRRFR+GV +KKNQSGGG
Sbjct: 166 IVAPPGRRRFRNGVTVKKNQSGGG 189
>Os11g0638500
Length = 184
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 105/157 (66%), Gaps = 6/157 (3%)
Query: 41 ALVVDPSDLGVC--RTEVKIPASAVNPSGEGKAPM--EXXXXXXXXXXMARFTQAQINNC 96
+ +DPSD +++ +IPA A S EGKAP+ + M RFTQAQINNC
Sbjct: 16 STTMDPSDEAPSGKKSDGQIPAPAPVTSDEGKAPVMEKKKKKKKAKTKMVRFTQAQINNC 75
Query: 97 MAFKEE-MPDFDNMPSIIEILGDDLAKCSQEYIDELKAIDDSREEDKKFWIEMNRQIREE 155
+ +KEE MPD+DNMPSIIEILGDDLA C Q+YIDELKAIDDSREEDK FWI+M +IR E
Sbjct: 76 ITYKEEEMPDYDNMPSIIEILGDDLANCPQDYIDELKAIDDSREEDKAFWIKMQNEIRGE 135
Query: 156 REGILNQYYTKGYAX-XXXXXXXXXXXGNKGHARVAA 191
REGIL QY+TKGYA NK ARVAA
Sbjct: 136 REGILRQYFTKGYAEYEVDIDDDDDDKDNKVPARVAA 172
>Os12g0481500
Length = 1699
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 119/197 (60%), Gaps = 24/197 (12%)
Query: 30 ASVMDLSGKGKALVVDPSDLGVCRTEVKIPASAVNPSGEGKAPM------EXXXXXXXXX 83
A++ S +GKALV+ P AVNPSGEG+AP+ +
Sbjct: 1518 AAIKTASERGKALVIQP---------------AVNPSGEGEAPVMEEKKKKKTTTTKKKT 1562
Query: 84 XMARFTQAQINNCMAFKE-EMPDFDNMPSIIEILGDD-LAKCSQEYIDELKAIDDSREED 141
RFTQ QINNC+A+K+ E+P DNMPS++E LG++ LA Q+ ID+LKA +D RE +
Sbjct: 1563 KTMRFTQEQINNCIAYKDVEIPFNDNMPSLLEALGEETLANFPQDLIDKLKAYEDEREAE 1622
Query: 142 KKFWIEMNRQIREEREGILNQYYTKGYAXXXXXXXXXXXXGNKGHARVAATSGRRRFRHG 201
K +IE+ IR ER+GILNQYYTKGYA +K R+ A GRRRFR+G
Sbjct: 1623 KASFIEIQNHIRGERDGILNQYYTKGYAEYEVVVDDDGEEDSKVPPRIVAPPGRRRFRNG 1682
Query: 202 VALKKNQS-GGGSIRKI 217
V +KKNQS GGGS+RKI
Sbjct: 1683 VTVKKNQSGGGGSVRKI 1699
>Os10g0351000
Length = 280
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 25/179 (13%)
Query: 53 RTEVKIPASAVNPSGEGKAPMEXXXXXXXXXXMARFTQAQINNCMAFKEEMPDFD-NMPS 111
R+E K+PA+A++P+ E K M R+TQ QI C A E+ D D +
Sbjct: 112 RSEGKVPATAIDPTNEKK----------KRTKMVRYTQDQIQYCFANSVELSDDDEDDFK 161
Query: 112 IIEILGDD-LAKCSQEYIDELKAIDDSREEDKKFWIEMNRQIREEREGILN--------- 161
+ E+L + L + SQEY+ +L A++ + E++K ++ +R ERE I N
Sbjct: 162 LTEVLSKECLGRMSQEYLAKLYAMEIAEEKEKANLKKIQDVLRNERENIFNIREKPEDVL 221
Query: 162 -QYYTKGYAXXXXXXXXXX-XXGNKGHARVAATSGRRRFRHGVALKKNQSGGGS-IRKI 217
QY+TKGYA NK HARVA GRRRFR+GVA+KKNQSGGGS IRKI
Sbjct: 222 KQYHTKGYAEYEVVVDDDKGDEDNKVHARVAP-PGRRRFRNGVAMKKNQSGGGSIIRKI 279
>Os11g0638600
Length = 145
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 85 MARFTQAQINNCMAF---KEEMPDFDNMPSIIEILGDD-LAKCSQEYIDELKAIDDSREE 140
M RFTQ QI NCMAF + D +++P + E+L D L + E +D L +++R E
Sbjct: 8 MVRFTQQQIKNCMAFSADISDDDDEESLPKLSEVLSKDILDRVPPEVLDSLIEFENTRGE 67
Query: 141 DKKFWIEMNRQIREEREGILNQYYTKGYA--XXXXXXXXXXXXGNKGHARVAATSGRRRF 198
K W ++ + EER+ IL QYYTKGYA NK ARVA RRRF
Sbjct: 68 RKARWEKLRDDLHEERDAILKQYYTKGYAEYEVYDDEDDDEDEDNKVPARVAPPGRRRRF 127
Query: 199 RHGVALKKNQSGGGSIRKI 217
R+GVA+KKN+S GG+IRKI
Sbjct: 128 RNGVAVKKNRS-GGNIRKI 145
>Os08g0528400
Length = 361
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 19/161 (11%)
Query: 66 SGEGKAPMEXXXXXXXXXXMARFTQAQINNCMAFKEEMPDFDNMPSIIEILGDD-LAKCS 124
S E KAP+ M R+TQ QI C+A EE+ D + + E+L + LA+
Sbjct: 32 SDESKAPI---IEKKKKKKMVRYTQEQIEYCIANPEELWDIKVI-KLTELLSKECLARMG 87
Query: 125 QEYIDELKAIDDSREEDKKFWIEMNRQIREEREGI----------LNQYYTKGYAXXXXX 174
QE +D+L A++ + EE ++ +R ERE I L QYY KGYA
Sbjct: 88 QEQVDKLYAMERTEEEQIVRRKKLQEVLRNERENIYKIPDKPQDVLKQYYAKGYAEYEVV 147
Query: 175 XXXXXXXGNKGH---ARVAATSGRRRFRHGVALKKNQSGGG 212
++ ARVA GRRRFR+G+ +KKNQSGGG
Sbjct: 148 VDDGDVDVDEDDEVPARVA-HPGRRRFRNGIVVKKNQSGGG 187
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,203,234
Number of extensions: 273508
Number of successful extensions: 767
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 8
Length of query: 217
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 120
Effective length of database: 11,971,043
Effective search space: 1436525160
Effective search space used: 1436525160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)