Os03g0160900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0160900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.69 | 0.18 | 13.1 | 0.545 | 0.526 | -0.335 | -0.0492 | -0.293 | 0.21 | 18.6 | 22.5 | 1945 | -- | -- |
| 14.91 | 0.18 | 13.1 | 0.437 | 0.529 | -0.347 | -0.0379 | -- | 0.189 | 18.6 | 22.6 | 1925 | -- | -- |
| 14.69 | 0.178 | 13.1 | 0.545 | 0.527 | -0.333 | -- | -0.286 | 0.21 | 18.7 | 22.6 | 1895 | -- | -- |
| 14.88 | 0.18 | 13.1 | 0.443 | 0.527 | -0.335 | -- | -- | 0.185 | 18.7 | 22.57 | 1895 | -- | -- |
| 29.08 | 0.251 | 13.1 | 0.552 | -- | -0.347 | -- | -0.325 | 0.203 | -- | 22.5 | 2009 | -- | -- |
| 19.4 | 0.206 | 13.1 | 0.572 | 0.536 | -- | -0.00965 | -- | 0.308 | 18.8 | -- | -- | -- | -- |
| 19.4 | 0.206 | 13.1 | 0.572 | 0.535 | -- | -- | -- | 0.308 | 18.8 | -- | -- | -- | -- |
| 22.6 | 0.221 | 13.1 | 0.557 | -- | -0.456 | -- | -- | 0.15 | -- | 25.8 | 428 | -- | -- |
| 16.91 | 0.192 | 13.2 | -- | 0.533 | -0.513 | -- | -- | 0.134 | 18.7 | 18.5 | 29406 | -- | -- |
| 34.38 | 0.274 | 13.1 | 0.56 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 28.03 | 0.248 | 13.1 | -- | 0.529 | -- | -- | -- | 0.244 | 18.8 | -- | -- | -- | -- |
| 26.64 | 0.24 | 13.1 | -- | -- | -0.529 | -- | -- | 0.117 | -- | 26.39 | 497 | -- | -- |
| 42.67 | 0.305 | 13.1 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 21 | 15.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 22 | 15.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 27 | 15.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 34 | 15.12 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 51 | 15.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 70 | 15.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 80 | 15.17 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 11 |
| 197 | 15.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 207 | 15.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 208 | 15.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 217 | 15.28 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 218 | 15.28 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 219 | 15.28 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 254 | 15.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 260 | 15.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 326 | 15.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 348 | 15.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 358 | 15.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 369 | 15.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 370 | 15.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 387 | 15.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 437 | 15.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 535 | 15.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 590 | 15.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 685 | 15.44 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 760 | 15.46 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 808 | 15.47 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 847 | 15.48 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |