BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0159400 Os03g0159400|AK108557
         (214 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0159400  Protein of unknown function DUF623, plant doma...   180   6e-46

>Os03g0159400 Protein of unknown function DUF623, plant domain containing protein
          Length = 214

 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 100/170 (58%)

Query: 45  PCXXXXXLRCKNSXXXXXXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXRRFFLSSPGR 104
           PC     LRCKNS                     N               RRFFLSSPGR
Sbjct: 45  PCSSSSSLRCKNSGGVGGEDDDDGVGGGGAVVAENASALSDSGLSSAIASRRFFLSSPGR 104

Query: 105 SNSIVDSSAHXXXXXXXXXXXXXPTYSPDPHADFLRSMEEMVXXXXXXXXXXXXXXXXHE 164
           SNSIVDSSAH             PTYSPDPHADFLRSMEEMV                HE
Sbjct: 105 SNSIVDSSAHGAAVGVGAAGVAVPTYSPDPHADFLRSMEEMVAALRLDARRRGDRARLHE 164

Query: 165 LLLCYLALNDRRAHKYVVSAFTDLLLRITAAANLDDGEPPRHGRHLHESH 214
           LLLCYLALNDRRAHKYVVSAFTDLLLRITAAANLDDGEPPRHGRHLHESH
Sbjct: 165 LLLCYLALNDRRAHKYVVSAFTDLLLRITAAANLDDGEPPRHGRHLHESH 214



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,773,635
Number of extensions: 99954
Number of successful extensions: 248
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)