Os03g0159400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF623, plant domain containing protein.
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Os03g0159400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF623, plant domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.87 | 0.523 | 6.99 | -0.492 | 2.58 | 1.92 | -0.0967 | 0.926 | 0.0843 | 18 | 29.68 | 83 | 23.1 | -- |
| 124.46 | 0.52 | 6.99 | -0.539 | 2.75 | 2.02 | -0.803 | -- | 0.0846 | 17.8 | 30.34 | 82 | 23.6 | -- |
| 123.86 | 0.518 | 6.99 | -0.49 | 2.62 | 1.94 | -- | 1 | 0.0837 | 17.9 | 30.33 | 82 | 23.2 | -- |
| 126.01 | 0.523 | 6.99 | -0.529 | 2.71 | 1.99 | -- | -- | 0.0798 | 17.8 | 29.02 | 82 | 23.5 | -- |
| 164.07 | 0.597 | 6.97 | -0.565 | -- | 1.23 | -- | -1.16 | 0.0316 | -- | 220.4 | 3426 | 15.5 | -- |
| 164.85 | 0.602 | 6.97 | -0.569 | 1.06 | -- | -0.714 | -- | 0.0438 | 19.1 | -- | -- | -- | -- |
| 166.15 | 0.604 | 6.97 | -0.556 | 1.05 | -- | -- | -- | 0.0417 | 19.2 | -- | -- | -- | -- |
| 160.14 | 0.589 | 6.93 | -0.565 | -- | 1.51 | -- | -- | 0.0954 | -- | 226.4 | 3812 | 18.5 | -- |
| 133.31 | 0.538 | 6.98 | -- | 2.66 | 1.97 | -- | -- | 0.14 | 17.8 | 28.37 | 82 | 23.4 | -- |
| 224.86 | 0.701 | 6.95 | -0.576 | -- | -- | -- | -- | 0.0232 | -- | -- | -- | -- | -- |
| 174.3 | 0.618 | 6.96 | -- | 1.06 | -- | -- | -- | 0.104 | 19.1 | -- | -- | -- | -- |
| 168.51 | 0.605 | 6.92 | -- | -- | 1.47 | -- | -- | 0.141 | -- | 279.2 | 3883 | 19.1 | -- |
| 233.6 | 0.713 | 6.93 | -- | -- | -- | -- | -- | 0.0871 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.17 | radiation | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 3 | 124.32 | radiation | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 16 | 126.44 | humidity | 60 | 30 | > th | dose dependent | sin | 6 | NA |
| 17 | 126.62 | radiation | 1 | 270 | > th | dose dependent | sin | 10 | NA |
| 24 | 126.82 | humidity | 80 | 10 | > th | dose independent | sin | 5 | NA |
| 27 | 127.22 | humidity | 90 | 90 | < th | dose dependent | sin | 8 | NA |
| 28 | 127.29 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 38 | 127.90 | radiation | 1 | 270 | > th | dose dependent | rect. | 18 | 16 |
| 39 | 127.95 | radiation | 1 | 90 | > th | dose dependent | sin | 7 | NA |
| 40 | 127.95 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 103 | 129.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 116 | 130.03 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 121 | 130.22 | radiation | 10 | 90 | < th | dose independent | sin | 5 | NA |
| 124 | 130.32 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 127 | 130.47 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 135 | 130.71 | radiation | 10 | 270 | > th | dose independent | sin | 9 | NA |
| 137 | 130.75 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 19 |
| 141 | 130.81 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 15 |
| 148 | 130.85 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 8 |
| 161 | 130.89 | humidity | 90 | 90 | < th | dose dependent | rect. | 19 | 19 |
| 166 | 130.98 | radiation | 10 | 270 | < th | dose independent | sin | 9 | NA |
| 168 | 131.08 | humidity | 80 | 10 | < th | dose independent | sin | 5 | NA |
| 181 | 131.38 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 4 |
| 195 | 131.46 | radiation | 10 | 90 | > th | dose independent | sin | 5 | NA |
| 227 | 131.74 | humidity | 60 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 235 | 131.84 | humidity | 80 | 90 | < th | dose independent | rect. | 19 | 19 |
| 244 | 131.97 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 19 |
| 262 | 132.03 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 20 |
| 264 | 132.06 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 280 | 132.27 | humidity | 80 | 10 | < th | dose independent | rect. | 20 | 18 |
| 295 | 132.54 | humidity | 90 | 30 | < th | dose independent | rect. | 7 | 7 |
| 303 | 132.65 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 14 |
| 305 | 132.66 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 10 |
| 336 | 132.86 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 341 | 132.91 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 344 | 132.95 | humidity | 80 | 90 | < th | dose independent | sin | 7 | NA |
| 407 | 133.47 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 21 |
| 443 | 133.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 449 | 133.74 | humidity | 90 | 270 | < th | dose independent | rect. | 18 | 17 |
| 458 | 133.81 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 9 |
| 459 | 133.81 | radiation | 10 | 270 | < th | dose independent | rect. | 23 | 15 |
| 578 | 134.60 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 14 |
| 598 | 134.64 | humidity | 50 | 270 | > th | dose dependent | rect. | 21 | 9 |
| 601 | 134.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 625 | 134.86 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 647 | 135.00 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 8 |
| 653 | 135.03 | radiation | 10 | 270 | < th | dose independent | rect. | 22 | 11 |
| 669 | 135.13 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 16 |
| 688 | 135.25 | temperature | 25 | 90 | > th | dose dependent | sin | 7 | NA |
| 702 | 135.32 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 16 |
| 805 | 135.69 | radiation | 10 | 90 | < th | dose independent | rect. | 23 | 9 |
| 845 | 135.85 | radiation | 40 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 955 | 136.37 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 10 |