BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0148400 Os03g0148400|AK072852
         (442 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0148400  Protein of unknown function DUF740 family protein   685   0.0  

>Os03g0148400 Protein of unknown function DUF740 family protein
          Length = 442

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/385 (89%), Positives = 345/385 (89%)

Query: 33  CGRHPSQVFTGVCSTCLMERLSSVRNPAXXXXXXXXXXGTADAGEGSSADHGKLRKTLML 92
           CGRHPSQVFTGVCSTCLMERLSSVRNPA          GTADAGEGSSADHGKLRKTLML
Sbjct: 33  CGRHPSQVFTGVCSTCLMERLSSVRNPAEEEEEEIVEVGTADAGEGSSADHGKLRKTLML 92

Query: 93  LFQLDDSCSGSAVGAAHPADAKDPQVADFEVDPXXXXXXXXXXXXXXLRSILPRKGMXXX 152
           LFQLDDSCSGSAVGAAHPADAKDPQVADFEVDP              LRSILPRKGM   
Sbjct: 93  LFQLDDSCSGSAVGAAHPADAKDPQVADFEVDPGGGNRGAKWKGGAWLRSILPRKGMRWS 152

Query: 153 XXXXXXXXXXXXXVDPDGAGDNAQVERKPSFRRSCEWMVCREPVRGSGSLEPPRHSWDGS 212
                        VDPDGAGDNAQVERKPSFRRSCEWMVCREPVRGSGSLEPPRHSWDGS
Sbjct: 153 RRKEPPRPPRPRPVDPDGAGDNAQVERKPSFRRSCEWMVCREPVRGSGSLEPPRHSWDGS 212

Query: 213 MVGRALACSFACLEEPQPPPDGERRAQRSNAEEEAGESRAGVAESRNGDHLADAGGEGRH 272
           MVGRALACSFACLEEPQPPPDGERRAQRSNAEEEAGESRAGVAESRNGDHLADAGGEGRH
Sbjct: 213 MVGRALACSFACLEEPQPPPDGERRAQRSNAEEEAGESRAGVAESRNGDHLADAGGEGRH 272

Query: 273 LSGRRNCSDTGPEMTMSGVGRRRSNRWSRVWDRSITSPLKEFVRKGEHVLERSLSESRKD 332
           LSGRRNCSDTGPEMTMSGVGRRRSNRWSRVWDRSITSPLKEFVRKGEHVLERSLSESRKD
Sbjct: 273 LSGRRNCSDTGPEMTMSGVGRRRSNRWSRVWDRSITSPLKEFVRKGEHVLERSLSESRKD 332

Query: 333 TRRGRNGETGDMDCEIQPGRNGHGSVRASQGSFRSSQAVANGDVHNFRTDWLRNKECKIG 392
           TRRGRNGETGDMDCEIQPGRNGHGSVRASQGSFRSSQAVANGDVHNFRTDWLRNKECKIG
Sbjct: 333 TRRGRNGETGDMDCEIQPGRNGHGSVRASQGSFRSSQAVANGDVHNFRTDWLRNKECKIG 392

Query: 393 RSRSVHYTSPGNLDNGMLRFYLTPM 417
           RSRSVHYTSPGNLDNGMLRFYLTPM
Sbjct: 393 RSRSVHYTSPGNLDNGMLRFYLTPM 417



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,627,533
Number of extensions: 688686
Number of successful extensions: 2476
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2476
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 338
Effective length of database: 11,605,545
Effective search space: 3922674210
Effective search space used: 3922674210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)