BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0139000 Os03g0139000|AK060973
         (311 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0139000  Conserved hypothetical protein                      320   1e-87

>Os03g0139000 Conserved hypothetical protein
          Length = 311

 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/266 (66%), Positives = 178/266 (66%)

Query: 46  AALRTRIMXXXXXXXXXXXXXXXXXXXXXDRVIDFGKHKGQMLGTLPPSYLRWVVAELDY 105
           AALRTRIM                     DRVIDFGKHKGQMLGTLPPSYLRWVVAELDY
Sbjct: 46  AALRTRIMLLRPLRAAASPGPAASSRPARDRVIDFGKHKGQMLGTLPPSYLRWVVAELDY 105

Query: 106 GDTAAWASLAREVLDDPVYVDRVEWEHAHRFLRXXXXXXXXXXXXPLHEMADRFGWDLSD 165
           GDTAAWASLAREVLDDPVYVDRVEWEHAHRFLR            PLHEMADRFGWDLSD
Sbjct: 106 GDTAAWASLAREVLDDPVYVDRVEWEHAHRFLRGDTDYDGDGEDGPLHEMADRFGWDLSD 165

Query: 166 EEGWSRLDFRLLGTSYGGRIPRKGGRRQTTTSSLFDIGAETDGPXXXXXXXXXXXXXXXX 225
           EEGWSRLDFRLLGTSYGGRIPRKGGRRQTTTSSLFDIGAETDGP                
Sbjct: 166 EEGWSRLDFRLLGTSYGGRIPRKGGRRQTTTSSLFDIGAETDGPRGKRDERRERMRLRRE 225

Query: 226 XXXXGAKLDMLGVNAGVKDGGVLGTPXXXXXXXXXXXDIXXXXXXXXXXXEVLGEKVLXX 285
               GAKLDMLGVNAGVKDGGVLGTP           DI           EVLGEKVL  
Sbjct: 226 TQVRGAKLDMLGVNAGVKDGGVLGTPRKARTRTTAKTDILGLGRRRSRGGEVLGEKVLPG 285

Query: 286 XXXXXXXXXXXRQAFLDKVRKLKDDS 311
                      RQAFLDKVRKLKDDS
Sbjct: 286 SGGQGGNPFPGRQAFLDKVRKLKDDS 311



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,625,704
Number of extensions: 221479
Number of successful extensions: 421
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)