Os03g0139000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0139000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.02 | 0.62 | 7.21 | 0.13 | 1.46 | 1.15 | -0.436 | 2.6 | -1.01 | 20.2 | 42.72 | 614 | -- | -- |
| 182.04 | 0.628 | 7.22 | -0.0108 | 1.47 | 1.25 | -0.177 | -- | -1.07 | 20.3 | 40 | 599 | -- | -- |
| 174.56 | 0.615 | 7.21 | 0.141 | 1.46 | 1.15 | -- | 2.52 | -1.02 | 20.2 | 42.81 | 612 | -- | -- |
| 182.08 | 0.628 | 7.22 | -0.0178 | 1.47 | 1.24 | -- | -- | -1.06 | 20.3 | 40.49 | 599 | -- | -- |
| 229.18 | 0.705 | 7.17 | 0.019 | -- | 2.29 | -- | 1.83 | -1.15 | -- | -2.984 | 794 | -- | -- |
| 214.04 | 0.686 | 7.21 | 0.0494 | 2 | -- | 0.47 | -- | -0.95 | 19.4 | -- | -- | -- | -- |
| 214.64 | 0.686 | 7.21 | 0.0385 | 2 | -- | -- | -- | -0.949 | 19.4 | -- | -- | -- | -- |
| 231.91 | 0.709 | 7.21 | -0.13 | -- | 2.32 | -- | -- | -1.22 | -- | -0.4539 | 802 | -- | -- |
| 182.09 | 0.628 | 7.22 | -- | 1.47 | 1.24 | -- | -- | -1.06 | 20.3 | 40.52 | 599 | -- | -- |
| 428.39 | 0.967 | 7.16 | 0.00631 | -- | -- | -- | -- | -0.982 | -- | -- | -- | -- | -- |
| 214.68 | 0.685 | 7.21 | -- | 2 | -- | -- | -- | -0.954 | 19.4 | -- | -- | -- | -- |
| 232.36 | 0.71 | 7.21 | -- | -- | 2.31 | -- | -- | -1.21 | -- | -1.077 | 802 | -- | -- |
| 428.39 | 0.966 | 7.16 | -- | -- | -- | -- | -- | -0.982 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.94 | radiation | 40 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 2 | 171.07 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 21 |
| 9 | 173.70 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 9 |
| 11 | 174.00 | radiation | 40 | 720 | > th | dose dependent | sin | 12 | NA |
| 16 | 174.34 | radiation | 40 | 720 | > th | dose independent | sin | 12 | NA |
| 18 | 175.28 | humidity | 80 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 19 | 175.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 10 |
| 21 | 175.49 | radiation | 30 | 720 | > th | dose dependent | rect. | 13 | 1 |
| 26 | 175.63 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 23 |
| 29 | 175.88 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 49 | 176.01 | radiation | 40 | 720 | < th | dose independent | rect. | 4 | 19 |
| 61 | 176.54 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 5 |
| 67 | 176.71 | humidity | 80 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 70 | 176.74 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 73 | 176.78 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 85 | 177.16 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 92 | 177.37 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 95 | 177.44 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 112 | 177.46 | radiation | 40 | 720 | > th | dose dependent | no | NA | NA |
| 268 | 177.53 | humidity | 50 | 270 | > th | dose independent | rect. | 1 | 23 |
| 293 | 177.64 | humidity | 50 | 270 | < th | dose independent | rect. | 15 | 3 |
| 326 | 177.66 | humidity | 50 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 330 | 177.67 | humidity | 50 | 270 | < th | dose independent | sin | 13 | NA |
| 333 | 177.68 | humidity | 50 | 270 | < th | dose dependent | sin | 13 | NA |
| 351 | 177.69 | humidity | 50 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 372 | 177.74 | humidity | 50 | 270 | > th | dose independent | sin | 13 | NA |
| 374 | 177.74 | radiation | 40 | 720 | > th | dose independent | rect. | 13 | 2 |
| 377 | 177.77 | humidity | 50 | 270 | < th | dose independent | rect. | 13 | 5 |
| 482 | 177.96 | humidity | 80 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 623 | 178.03 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 627 | 178.07 | humidity | 50 | 270 | > th | dose independent | rect. | 11 | 13 |
| 647 | 178.10 | humidity | 70 | 270 | < th | dose independent | rect. | 15 | 2 |
| 651 | 178.15 | humidity | 70 | 270 | > th | dose independent | rect. | 12 | 12 |
| 690 | 178.30 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 2 |
| 735 | 178.42 | radiation | 40 | 720 | < th | dose independent | rect. | 11 | 4 |
| 742 | 178.46 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 2 |
| 764 | 178.50 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 810 | 178.65 | humidity | 50 | 270 | > th | dose independent | sin | 19 | NA |
| 812 | 178.66 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 817 | 178.71 | humidity | 70 | 270 | < th | dose independent | sin | 15 | NA |
| 857 | 178.77 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |