BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0137400 Os03g0137400|AK101118
         (792 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0137400  Protein of unknown function DUF221 domain cont...  1369   0.0  

>Os03g0137400 Protein of unknown function DUF221 domain containing protein
          Length = 792

 Score = 1369 bits (3543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 677/775 (87%), Positives = 677/775 (87%)

Query: 18  WYGSIQYLVNISAVGAASCVLLFLLVKLRFDHRRIPGPSALAAKLLAVYHATAPQIALHC 77
           WYGSIQYLVNISAVGAASCVLLFLLVKLRFDHRRIPGPSALAAKLLAVYHATAPQIALHC
Sbjct: 18  WYGSIQYLVNISAVGAASCVLLFLLVKLRFDHRRIPGPSALAAKLLAVYHATAPQIALHC 77

Query: 78  GADAAQFLLFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHIPKSSPXX 137
           GADAAQFLLFER                                      SHIPKSSP  
Sbjct: 78  GADAAQFLLFERASFLVLAAVAAAAVAAALPLNLLAGDAAIADQFAATTISHIPKSSPLL 137

Query: 138 XXXXXXXXXXXXXXXXGISRMEDALRITRFRXXXXXXXXXXXXXVAVFTIMIQGIPKTLA 197
                           GISRMEDALRITRFR             VAVFTIMIQGIPKTLA
Sbjct: 138 WLHLLLTAAVVAIAHLGISRMEDALRITRFRDGNGNPSDPNSSSVAVFTIMIQGIPKTLA 197

Query: 198 ADKTPLKDYFEHKYPGKVYRVIVPFDLCTLEYLAEEWGKVRNRISWLEARMDARNLFDEF 257
           ADKTPLKDYFEHKYPGKVYRVIVPFDLCTLEYLAEEWGKVRNRISWLEARMDARNLFDEF
Sbjct: 198 ADKTPLKDYFEHKYPGKVYRVIVPFDLCTLEYLAEEWGKVRNRISWLEARMDARNLFDEF 257

Query: 258 AQGGRHSEEHWIVRRCKELWVMTAERFGFTDEEMLRRLQTKKLVLGSRLSDYKDGRAPGA 317
           AQGGRHSEEHWIVRRCKELWVMTAERFGFTDEEMLRRLQTKKLVLGSRLSDYKDGRAPGA
Sbjct: 258 AQGGRHSEEHWIVRRCKELWVMTAERFGFTDEEMLRRLQTKKLVLGSRLSDYKDGRAPGA 317

Query: 318 GIAFVVFKDVYTANKAVRDFRMERKKTPIGRFFPVMELQLERSRWTVERAPPASDIYWNH 377
           GIAFVVFKDVYTANKAVRDFRMERKKTPIGRFFPVMELQLERSRWTVERAPPASDIYWNH
Sbjct: 318 GIAFVVFKDVYTANKAVRDFRMERKKTPIGRFFPVMELQLERSRWTVERAPPASDIYWNH 377

Query: 378 LGLSKTSLGLRRIAVNTCLILMLLFFSSPLAIISGMQSAARIINVEAMDNAKSWLVWLQS 437
           LGLSKTSLGLRRIAVNTCLILMLLFFSSPLAIISGMQSAARIINVEAMDNAKSWLVWLQS
Sbjct: 378 LGLSKTSLGLRRIAVNTCLILMLLFFSSPLAIISGMQSAARIINVEAMDNAKSWLVWLQS 437

Query: 438 SSWFWTIIFQFLPNVLIFVSMYIIIPSVLSYFSKFECHLTVSGEQRAALLKMVCFFLVNL 497
           SSWFWTIIFQFLPNVLIFVSMYIIIPSVLSYFSKFECHLTVSGEQRAALLKMVCFFLVNL
Sbjct: 438 SSWFWTIIFQFLPNVLIFVSMYIIIPSVLSYFSKFECHLTVSGEQRAALLKMVCFFLVNL 497

Query: 498 ILLRALVESSLESWILSMGRCYLDSVDCKQIEQYXXXXXXXXXXXXXXXXXITCTFLGIS 557
           ILLRALVESSLESWILSMGRCYLDSVDCKQIEQY                 ITCTFLGIS
Sbjct: 498 ILLRALVESSLESWILSMGRCYLDSVDCKQIEQYLSPSFLSRSSLSSLAFLITCTFLGIS 557

Query: 558 FDLLAPIPWIKHVMKKFRKNDMVQLVPEENEDYQLMHDGEETNNLRAPLMSEREDSGILN 617
           FDLLAPIPWIKHVMKKFRKNDMVQLVPEENEDYQLMHDGEETNNLRAPLMSEREDSGILN
Sbjct: 558 FDLLAPIPWIKHVMKKFRKNDMVQLVPEENEDYQLMHDGEETNNLRAPLMSEREDSGILN 617

Query: 618 GIEEHDLSLYPINRSFHMPKQTFDFAQYYAFDITIFALTMIYSLFAPLTVPVGAVYFGYR 677
           GIEEHDLSLYPINRSFHMPKQTFDFAQYYAFDITIFALTMIYSLFAPLTVPVGAVYFGYR
Sbjct: 618 GIEEHDLSLYPINRSFHMPKQTFDFAQYYAFDITIFALTMIYSLFAPLTVPVGAVYFGYR 677

Query: 678 YLVDKYNFLFIYRVRGFPAGNDGKLMDMVICIMQFCVIXXXXXXXXXXXXQGDPMKLQAI 737
           YLVDKYNFLFIYRVRGFPAGNDGKLMDMVICIMQFCVI            QGDPMKLQAI
Sbjct: 678 YLVDKYNFLFIYRVRGFPAGNDGKLMDMVICIMQFCVIFFLVAMLLFFAVQGDPMKLQAI 737

Query: 738 CTLSLLVFYKLLPSRSDRFQPSLLEGMQTVNSFVDGPTDYEVFSQPDLDWSLYQS 792
           CTLSLLVFYKLLPSRSDRFQPSLLEGMQTVNSFVDGPTDYEVFSQPDLDWSLYQS
Sbjct: 738 CTLSLLVFYKLLPSRSDRFQPSLLEGMQTVNSFVDGPTDYEVFSQPDLDWSLYQS 792



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,397,362
Number of extensions: 864305
Number of successful extensions: 2098
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2100
Number of HSP's successfully gapped: 3
Length of query: 792
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 683
Effective length of database: 11,344,475
Effective search space: 7748276425
Effective search space used: 7748276425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 160 (66.2 bits)