BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0133300 Os03g0133300|AK064510
         (371 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0133300  Conserved hypothetical protein                      642   0.0  
Os11g0586300  Conserved hypothetical protein                      199   2e-51

>Os03g0133300 Conserved hypothetical protein
          Length = 371

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/334 (96%), Positives = 322/334 (96%)

Query: 17  VRSLTAMXXXXXXXXXXXXQWKQQNFYPRCTPRGPAPQSRDTPPKRDTGIASEKEWGINL 76
           VRSLTAM            QWKQQNFYPRCTPRGPAPQSRDTPPKRDTGIASEKEWGINL
Sbjct: 17  VRSLTAMPSLPFPSPRSRRQWKQQNFYPRCTPRGPAPQSRDTPPKRDTGIASEKEWGINL 76

Query: 77  LDEAVKESGTNEDGSTWYRESGDDRGDNGYRCRWARMGGQSHDGTTEWKETWWEKSDWTG 136
           LDEAVKESGTNEDGSTWYRESGDDRGDNGYRCRWARMGGQSHDGTTEWKETWWEKSDWTG
Sbjct: 77  LDEAVKESGTNEDGSTWYRESGDDRGDNGYRCRWARMGGQSHDGTTEWKETWWEKSDWTG 136

Query: 137 YKELGAEKSGKNGEGDSWWEKWKEVLYQDEWSNLARIERSAEKQAKSGAENAGWYEKWWE 196
           YKELGAEKSGKNGEGDSWWEKWKEVLYQDEWSNLARIERSAEKQAKSGAENAGWYEKWWE
Sbjct: 137 YKELGAEKSGKNGEGDSWWEKWKEVLYQDEWSNLARIERSAEKQAKSGAENAGWYEKWWE 196

Query: 197 KYDAKGWTEKGAHKYGRLNEQSWWERWGEHYDGRGFVLKWTDKWAETDLGTKWGDKWEEK 256
           KYDAKGWTEKGAHKYGRLNEQSWWERWGEHYDGRGFVLKWTDKWAETDLGTKWGDKWEEK
Sbjct: 197 KYDAKGWTEKGAHKYGRLNEQSWWERWGEHYDGRGFVLKWTDKWAETDLGTKWGDKWEEK 256

Query: 257 FFAGIGSRQGETWHVSPGGDRWSRTWGEEHFGNGKVHKYGKSTTGESWDLVVDEETYYEA 316
           FFAGIGSRQGETWHVSPGGDRWSRTWGEEHFGNGKVHKYGKSTTGESWDLVVDEETYYEA
Sbjct: 257 FFAGIGSRQGETWHVSPGGDRWSRTWGEEHFGNGKVHKYGKSTTGESWDLVVDEETYYEA 316

Query: 317 EPHYGWADVVGDSTQLLSIQPVERPPGVYPTIDF 350
           EPHYGWADVVGDSTQLLSIQPVERPPGVYPTIDF
Sbjct: 317 EPHYGWADVVGDSTQLLSIQPVERPPGVYPTIDF 350



>Os11g0586300 Conserved hypothetical protein
          Length = 537

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/265 (44%), Positives = 165/265 (62%), Gaps = 14/265 (5%)

Query: 85  GTNEDGSTWYRESGDDRGDNGYRCRWARMGGQSHDGTTEWKETWWEKSDWTGYKELGAEK 144
           G   DGS W++E+G ++  +G  C+W  + G S DG  EW++ +WE SD   +KELG+EK
Sbjct: 262 GVRPDGSLWWKETGVEQRPDGVTCKWTVIRGVSADGAVEWEDKYWEASDRFDHKELGSEK 321

Query: 145 SGKNGEGDSWWEKWKEVLYQDEWSNLARIERSAEKQAKSGAENAGWYEKWWEKYDAKGWT 204
           SG++  G+ W E WKE ++QD    +  +E++A+K  ++G +   W E+WWE YD+ G  
Sbjct: 322 SGRDATGNVWREYWKESMWQDFTCGVMHMEKTADKWGQNG-KGEQWQEQWWEHYDSSGKA 380

Query: 205 EKGAHKYGRLNEQS---------WWERWGEHYDGRGFVLKWTDKWAETDLG---TKWGDK 252
           EK A K+  L+  +         W ERWGE YDG G   K+TDKWAE   G   +KWGDK
Sbjct: 381 EKWADKWCSLDPNTPLDVGHAHVWHERWGEKYDGCGGSAKYTDKWAERSEGDGWSKWGDK 440

Query: 253 WEEKFFA-GIGSRQGETWHVSPGGDRWSRTWGEEHFGNGKVHKYGKSTTGESWDLVVDEE 311
           W+E F   G G +QGETW     GDRW+RTWGE H   G VHKYG+S++GE WD  V ++
Sbjct: 441 WDEHFDPNGHGVKQGETWWAGKYGDRWNRTWGEHHNCTGWVHKYGRSSSGEHWDTHVPQD 500

Query: 312 TYYEAEPHYGWADVVGDSTQLLSIQ 336
           T+YE  PH+G+     +S QL S++
Sbjct: 501 TWYERFPHFGFEHCFNNSVQLRSVK 525



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.132    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,457,970
Number of extensions: 826817
Number of successful extensions: 1849
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1804
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)