BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0128300 Os03g0128300|AK064718
         (162 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0128300  Conserved hypothetical protein                      197   2e-51

>Os03g0128300 Conserved hypothetical protein
          Length = 162

 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 106/151 (70%)

Query: 12  VSVQHVARASSDELLRKFADPDAHAKQITPPXXXXXXXXXXXXXXXXXGLSARDLESGAE 71
           VSVQHVARASSDELLRKFADPDAHAKQITPP                 GLSARDLESGAE
Sbjct: 12  VSVQHVARASSDELLRKFADPDAHAKQITPPRRSLALRRKRSSRRVASGLSARDLESGAE 71

Query: 72  LAAPKRRRSIGGSTEWKAGLLLPTTTTASARKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 131
           LAAPKRRRSIGGSTEWKAGLLLPTTTTASARK                            
Sbjct: 72  LAAPKRRRSIGGSTEWKAGLLLPTTTTASARKGSAASHSHRGGAARLDDAAGIGLLLAAL 131

Query: 132 ERTWRKTVAGASKMFVERHRTNHVLLISDMV 162
           ERTWRKTVAGASKMFVERHRTNHVLLISDMV
Sbjct: 132 ERTWRKTVAGASKMFVERHRTNHVLLISDMV 162



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,273,691
Number of extensions: 118997
Number of successful extensions: 410
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)