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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0128300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.31 (0.0673) R2 : 0.153
β1 : -2.95 (0.463) R2dD : 0.694 R2D : -0.739
β2 : 0.518 (0.101) R2dC : 0.0501 R2C : -0.0898
β3 : 1.18 (0.205) R2dE : 0.207 R2E : -0.297
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.1 (1.63) R2dD*E : 0.738 R2D*E : -0.622
γ1 : -0.533 (0.128) R2dN8 : 0.0893 R2N8 : -0.126
σ : 0.79
deviance : 287.42
__
_____
C
peak time of C : 23.2
E
wheather : temperature
threshold : 27.56
memory length : 5916
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
298.53 0.812 5.31 -2.71 0.45 1.19 0.491 -10.6 -0.455 23.6 26.4 4684 -- --
323.33 0.844 5 -0.232 0.509 0.339 0.588 -- -0.00308 23.9 26.4 4684 -- --
287.42 0.79 5.31 -2.95 0.518 1.18 -- -10.1 -0.533 23.2 27.56 5916 -- --
324 0.838 5.01 -0.316 0.433 0.181 -- -- -0.0355 22.8 30.02 7451 -- --
302.73 0.81 5.38 -3.57 -- 1.6 -- -13.6 -0.602 -- 28.27 5955 -- --
324.97 0.845 5 -0.188 0.441 -- 0.515 -- 0.00556 23.2 -- -- -- --
326.1 0.846 5 -0.209 0.44 -- -- -- 0.00406 23.1 -- -- -- --
335.88 0.854 4.99 -0.266 -- 0.198 -- -- -0.0062 -- 30.4 7028 -- --
325.06 0.84 4.99 -- 0.439 0.185 -- -- -0.0264 23.3 33.4 7527 -- --
338.14 0.859 4.99 -0.199 -- -- -- -- 0.00758 -- -- -- -- --
327.25 0.846 5 -- 0.438 -- -- -- 0.0273 23 -- -- -- --
329.69 0.846 4.97 -- -- -0.453 -- -- 0.11 -- 33.23 28191 -- --
339.18 0.86 4.99 -- -- -- -- -- 0.0296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.93 wind 1 43200 < th dose independent rect. 9 2
2 285.08 wind 1 43200 > th dose independent rect. 9 3
3 286.65 wind 1 43200 < th dose dependent rect. 9 2
5 287.69 wind 3 14400 > th dose dependent rect. 11 4
14 289.91 wind 9 14400 < th dose dependent rect. 11 4
18 290.20 wind 5 14400 < th dose independent rect. 11 5
22 290.36 wind 3 43200 < th dose dependent rect. 21 1
27 290.51 temperature 25 720 > th dose dependent rect. 1 8
30 290.60 wind 7 43200 < th dose dependent rect. 13 1
37 290.70 wind 5 14400 > th dose independent rect. 11 5
63 291.72 wind 5 14400 < th dose dependent rect. 11 1
66 291.78 temperature 25 720 > th dose dependent rect. 6 2
72 291.95 temperature 25 720 > th dose independent rect. 5 4
77 292.07 wind 5 43200 > th dose independent rect. 14 1
116 292.82 wind 9 14400 > th dose dependent rect. 13 2
124 292.99 humidity 70 43200 > th dose independent rect. 19 1
136 293.18 temperature 20 43200 > th dose dependent rect. 21 1
138 293.25 temperature 20 43200 > th dose dependent rect. 4 1
168 293.61 temperature 20 43200 > th dose dependent rect. 20 10
171 293.63 wind 9 14400 > th dose independent rect. 13 2
201 293.74 temperature 25 43200 > th dose independent rect. 9 2
215 293.80 wind 9 14400 < th dose independent rect. 13 2
220 293.80 temperature 20 720 > th dose dependent rect. 22 12
231 293.84 temperature 20 43200 > th dose dependent rect. 24 1
249 293.91 temperature 25 43200 < th dose independent rect. 8 3
251 293.91 temperature 20 43200 > th dose dependent rect. 24 9
268 293.95 temperature 20 43200 > th dose dependent sin 10 NA
296 294.02 temperature 25 4320 > th dose dependent rect. 3 7
311 294.06 temperature 25 4320 > th dose dependent rect. 5 5
376 294.27 temperature 25 43200 > th dose independent rect. 2 12
390 294.31 temperature 25 43200 > th dose independent rect. 2 20
395 294.32 temperature 25 43200 > th dose independent rect. 6 16
409 294.34 temperature 25 43200 < th dose independent rect. 2 20
415 294.35 temperature 25 43200 < th dose independent rect. 6 17
441 294.38 temperature 25 4320 > th dose dependent rect. 9 1
449 294.41 temperature 20 43200 > th dose dependent rect. 8 1
457 294.42 temperature 25 43200 < th dose independent rect. 2 12
486 294.45 temperature 25 43200 > th dose independent rect. 7 20
500 294.47 temperature 25 43200 > th dose independent sin 4 NA
506 294.47 temperature 25 43200 < th dose independent rect. 8 20
516 294.48 temperature 25 43200 > th dose independent rect. 19 21
518 294.48 temperature 25 43200 < th dose independent rect. 19 21
577 294.53 temperature 25 43200 < th dose independent rect. 14 8
664 294.60 temperature 25 43200 < th dose independent sin 18 NA
665 294.60 temperature 25 43200 < th dose independent sin 4 NA
699 294.62 temperature 25 43200 > th dose independent no NA NA
700 294.62 temperature 25 43200 < th dose independent no NA NA
713 294.64 temperature 25 43200 > th dose independent sin 18 NA
715 294.64 temperature 25 43200 > th dose independent rect. 14 8
760 294.68 wind 1 43200 > th dose independent rect. 4 2
762 294.68 temperature 25 43200 > th dose independent rect. 12 11
778 294.69 temperature 25 43200 < th dose independent rect. 12 23
779 294.69 temperature 25 43200 < th dose independent rect. 14 23
812 294.72 temperature 25 43200 > th dose independent rect. 12 23
813 294.72 temperature 25 43200 > th dose independent rect. 14 23