BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0120600 Os03g0120600|AK121692
         (120 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0120600  Conserved hypothetical protein                      102   5e-23
Os05g0243900  Conserved hypothetical protein                       99   5e-22

>Os03g0120600 Conserved hypothetical protein
          Length = 120

 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 59/97 (60%)

Query: 1  LHLPYPRATGFAXXXXXXXXXXXXXXXXXXXXXXXXXCRLEVSPCRRRSGYISLPLGQPP 60
          LHLPYPRATGFA                         CRLEVSPCRRRSGYISLPLGQPP
Sbjct: 1  LHLPYPRATGFASIRRVRFSPFPSPSTSKSSHHRHHPCRLEVSPCRRRSGYISLPLGQPP 60

Query: 61 TSPGARRSGTRXXXXXXXXXXXXXRRPSSPFSLFARL 97
          TSPGARRSGTR             RRPSSPFSLFARL
Sbjct: 61 TSPGARRSGTRVAAVVEAVHPPEHRRPSSPFSLFARL 97



>Os05g0243900 Conserved hypothetical protein
          Length = 119

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 58/97 (59%)

Query: 1  LHLPYPRATGFAXXXXXXXXXXXXXXXXXXXXXXXXXCRLEVSPCRRRSGYISLPLGQPP 60
          LHL YPRATGFA                         CRLEVSPCRRRSGYISLPLGQPP
Sbjct: 1  LHLSYPRATGFASIRRVRFSPFPSSSTSKSTHHRHHPCRLEVSPCRRRSGYISLPLGQPP 60

Query: 61 TSPGARRSGTRXXXXXXXXXXXXXRRPSSPFSLFARL 97
          TSPGARRSGTR             RRPSSPFSLFARL
Sbjct: 61 TSPGARRSGTRVAAAVEAVHPPEHRRPSSPFSLFARL 97



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,699,593
Number of extensions: 73494
Number of successful extensions: 196
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)