Os03g0120600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0120600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.7 | 0.592 | 3.78 | -0.623 | 0.126 | 2.27 | 0.968 | -3.79 | 0.374 | 15.2 | 23.75 | 45 | -- | -- |
| 165.03 | 0.598 | 3.71 | -0.0971 | 0.131 | 2.06 | 0.168 | -- | 0.528 | 14.4 | 23.9 | 35 | -- | -- |
| 160.93 | 0.591 | 3.76 | -0.487 | 0.124 | 2.28 | -- | -2.95 | 0.416 | 16.9 | 23.88 | 43 | -- | -- |
| 164.83 | 0.598 | 3.71 | -0.0845 | 0.166 | 2.02 | -- | -- | 0.533 | 16.3 | 23.86 | 35 | -- | -- |
| 161.42 | 0.592 | 3.76 | -0.502 | -- | 2.36 | -- | -2.9 | 0.405 | -- | 23.91 | 44 | -- | -- |
| 224.69 | 0.703 | 3.66 | 0.255 | 0.974 | -- | 0.898 | -- | 0.787 | 15.3 | -- | -- | -- | -- |
| 227.26 | 0.706 | 3.66 | 0.272 | 0.978 | -- | -- | -- | 0.792 | 15.3 | -- | -- | -- | -- |
| 165.87 | 0.6 | 3.71 | -0.103 | -- | 2.16 | -- | -- | 0.524 | -- | 23.93 | 37 | -- | -- |
| 164.96 | 0.598 | 3.71 | -- | 0.182 | 1.99 | -- | -- | 0.552 | 16.1 | 23.9 | 35 | -- | -- |
| 281.29 | 0.784 | 3.66 | 0.23 | -- | -- | -- | -- | 0.766 | -- | -- | -- | -- | -- |
| 229.21 | 0.708 | 3.66 | -- | 0.973 | -- | -- | -- | 0.761 | 15.3 | -- | -- | -- | -- |
| 166.14 | 0.6 | 3.71 | -- | -- | 2.14 | -- | -- | 0.541 | -- | 23.99 | 37 | -- | -- |
| 282.69 | 0.785 | 3.66 | -- | -- | -- | -- | -- | 0.74 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.16 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 4 | 162.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 17 | 162.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 21 | 162.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 52 | 163.20 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 60 | 163.30 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 106 | 164.58 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 107 | 164.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 112 | 164.72 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 115 | 164.75 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 124 | 165.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 179 | 165.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 200 | 166.63 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 205 | 166.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 214 | 166.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 221 | 166.94 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 230 | 167.10 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 234 | 167.14 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 245 | 167.31 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 261 | 167.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 13 |
| 267 | 167.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 285 | 167.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 291 | 167.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 296 | 167.90 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 304 | 167.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 327 | 168.04 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 333 | 168.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 12 |
| 339 | 168.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 346 | 168.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 10 |
| 355 | 168.21 | temperature | 25 | 4320 | > th | dose independent | sin | 22 | NA |
| 357 | 168.23 | temperature | 25 | 720 | < th | dose independent | sin | 4 | NA |
| 377 | 168.31 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 406 | 168.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 420 | 168.52 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 424 | 168.54 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 5 |
| 429 | 168.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 433 | 168.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 456 | 168.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 466 | 168.71 | temperature | 25 | 30 | > th | dose dependent | sin | 22 | NA |
| 478 | 168.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 8 |
| 479 | 168.77 | temperature | 25 | 4320 | < th | dose independent | sin | 21 | NA |
| 500 | 168.84 | temperature | 20 | 14400 | < th | dose independent | sin | 12 | NA |
| 523 | 168.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 19 |
| 531 | 168.98 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 588 | 169.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 591 | 169.18 | temperature | 20 | 14400 | > th | dose independent | sin | 12 | NA |
| 592 | 169.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 4 |
| 604 | 169.21 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 650 | 169.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 18 |
| 664 | 169.36 | temperature | 20 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 698 | 169.45 | temperature | 20 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 820 | 169.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 866 | 169.89 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |
| 890 | 169.93 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |