BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0119800 Os03g0119800|AK107249
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0119800  Hypothetical protein                                230   2e-61
Os11g0527200                                                       75   2e-14

>Os03g0119800 Hypothetical protein
          Length = 121

 Score =  230 bits (586), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/121 (92%), Positives = 112/121 (92%)

Query: 1   METGGTERQMRWEGEQKLEPLSXXXXXXXXXCTHASPACTRSARMRSEAQIDRFSRTWLG 60
           METGGTERQMRWEGEQKLEPLS         CTHASPACTRSARMRSEAQIDRFSRTWLG
Sbjct: 1   METGGTERQMRWEGEQKLEPLSPPAPARPRACTHASPACTRSARMRSEAQIDRFSRTWLG 60

Query: 61  SPICTRGARLGWPCRQPNTKGLHPWMRARCDAENQTHPKSIQWYECLALPGDGDFHITIC 120
           SPICTRGARLGWPCRQPNTKGLHPWMRARCDAENQTHPKSIQWYECLALPGDGDFHITIC
Sbjct: 61  SPICTRGARLGWPCRQPNTKGLHPWMRARCDAENQTHPKSIQWYECLALPGDGDFHITIC 120

Query: 121 S 121
           S
Sbjct: 121 S 121



>Os11g0527200 
          Length = 235

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 44/63 (69%)

Query: 39  CTRSARMRSEAQIDRFSRTWLGSPICTRGARLGWPCRQPNTKGLHPWMRARCDAENQTHP 98
           C+  A +RSEA+I+RFS  WLGSP C  GARL  P RQPN + LH  MRA+ D  NQT P
Sbjct: 117 CSHRAWLRSEARIERFSSAWLGSPFCISGARLRRPHRQPNKRKLHLQMRAKLDVGNQTRP 176

Query: 99  KSI 101
           K++
Sbjct: 177 KNL 179



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.133    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,683,134
Number of extensions: 168402
Number of successful extensions: 275
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)