Os03g0119800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0119800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.47 | 0.408 | 6.8 | 0.282 | 0.856 | -1.33 | -0.0156 | 1.89 | 0.0594 | 6.7 | 24.16 | 2101 | -- | -- |
| 75.25 | 0.404 | 6.76 | 0.39 | 0.813 | -1.87 | 0.291 | -- | 0.132 | 6.39 | 21.82 | 3200 | -- | -- |
| 74.32 | 0.402 | 6.79 | 0.266 | 0.8 | -1.47 | -- | 1.29 | 0.0652 | 6.56 | 23 | 3012 | -- | -- |
| 75.26 | 0.404 | 6.76 | 0.376 | 0.809 | -1.9 | -- | -- | 0.124 | 6.46 | 21.85 | 3202 | -- | -- |
| 106.1 | 0.48 | 6.82 | 0.292 | -- | -1.55 | -- | 1.26 | 0.0784 | -- | 22.84 | 2845 | -- | -- |
| 118.44 | 0.51 | 6.68 | 1.22 | 0.827 | -- | -0.0257 | -- | 0.492 | 6.37 | -- | -- | -- | -- |
| 118.44 | 0.51 | 6.67 | 1.22 | 0.826 | -- | -- | -- | 0.492 | 6.37 | -- | -- | -- | -- |
| 107.12 | 0.482 | 6.77 | 0.387 | -- | -2.01 | -- | -- | 0.151 | -- | 21.25 | 2857 | -- | -- |
| 77.99 | 0.411 | 6.77 | -- | 0.819 | -2.05 | -- | -- | 0.0564 | 6.75 | 21.83 | 3813 | -- | -- |
| 153.92 | 0.58 | 6.69 | 1.24 | -- | -- | -- | -- | 0.51 | -- | -- | -- | -- | -- |
| 157.82 | 0.588 | 6.71 | -- | 0.843 | -- | -- | -- | 0.356 | 6.29 | -- | -- | -- | -- |
| 110.06 | 0.489 | 6.79 | -- | -- | -2.34 | -- | -- | 0.0832 | -- | 20.98 | 2910 | -- | -- |
| 194.74 | 0.651 | 6.72 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.38 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 3 | 74.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 10 | 74.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 15 | 75.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 55 | 75.80 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 72 | 75.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 124 | 76.33 | temperature | 20 | 4320 | < th | dose dependent | sin | 10 | NA |
| 204 | 76.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 215 | 76.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 219 | 76.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 239 | 76.91 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 248 | 76.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 303 | 77.11 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 306 | 77.12 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 313 | 77.16 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 327 | 77.19 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 328 | 77.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 365 | 77.25 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 373 | 77.27 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 426 | 77.38 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 427 | 77.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 493 | 77.51 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 504 | 77.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 511 | 77.54 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 528 | 77.57 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 631 | 77.68 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 641 | 77.69 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 669 | 77.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 671 | 77.72 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 697 | 77.75 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 710 | 77.77 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 759 | 77.82 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 765 | 77.82 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 767 | 77.83 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 780 | 77.84 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 783 | 77.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 21 |
| 788 | 77.84 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 791 | 77.84 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 799 | 77.85 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 807 | 77.85 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 842 | 77.88 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 873 | 77.91 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 874 | 77.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 914 | 77.93 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 947 | 77.95 | humidity | 50 | 43200 | < th | dose independent | sin | 9 | NA |
| 961 | 77.96 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 976 | 77.96 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 22 |
| 977 | 77.97 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 980 | 77.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 996 | 77.97 | humidity | 50 | 43200 | < th | dose dependent | sin | 18 | NA |