BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0118100 Os03g0118100|AK072029
         (454 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0118100  Conserved hypothetical protein                      575   e-164

>Os03g0118100 Conserved hypothetical protein
          Length = 454

 Score =  575 bits (1482), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 311/454 (68%), Positives = 311/454 (68%)

Query: 1   MAVAAPARRLTPLTLRDFLEQSSSEGFRAYPRFPVADEGVAGGDLAPPVRLLIEAGLRRS 60
           MAVAAPARRLTPLTLRDFLEQSSSEGFRAYPRFPVADEGVAGGDLAPPVRLLIEAGLRRS
Sbjct: 1   MAVAAPARRLTPLTLRDFLEQSSSEGFRAYPRFPVADEGVAGGDLAPPVRLLIEAGLRRS 60

Query: 61  PSRLPSFYNFFHKSPGTLAKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAVDERDSLG 120
           PSRLPSFYNFFHKSPGTLAKI                             IAVDERDSLG
Sbjct: 61  PSRLPSFYNFFHKSPGTLAKISRLSRSLSRRFRDGLWRRRGEDDGEEDDDIAVDERDSLG 120

Query: 121 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSSTGSVXXXXXXXX 180
           L                                            QSSTGSV        
Sbjct: 121 LPSPVVSSCSSSECEYMAESEAELATTEEEKCASASSASEYEKTSQSSTGSVAFHGAADA 180

Query: 181 XXXXXKEDVGDEPVGRKLEMEDKQQLSXXXXXXXXXXXXXXXXXXXAGMCSPSFQQCLAE 240
                KEDVGDEPVGRKLEMEDKQQLS                   AGMCSPSFQQCLAE
Sbjct: 181 GGDGHKEDVGDEPVGRKLEMEDKQQLSPVSVLDFPFDDDDGEEGSDAGMCSPSFQQCLAE 240

Query: 241 LQRSKAELLHKIRRLEGLTQVVVPVDLEAQFTESDSSERTHLNANXXXXXXXXXXXXXXX 300
           LQRSKAELLHKIRRLEGLTQVVVPVDLEAQFTESDSSERTHLNAN               
Sbjct: 241 LQRSKAELLHKIRRLEGLTQVVVPVDLEAQFTESDSSERTHLNANSTSSSDDTATTAPTT 300

Query: 301 XRQCTDDQDVVNHGXXXXXXHSLLARLLESVVVTDEVSEWLLLDFFAEGVDRLRSSASSC 360
            RQCTDDQDVVNHG      HSLLARLLESVVVTDEVSEWLLLDFFAEGVDRLRSSASSC
Sbjct: 301 PRQCTDDQDVVNHGEEEEEEHSLLARLLESVVVTDEVSEWLLLDFFAEGVDRLRSSASSC 360

Query: 361 PLNDCEEAALLRAAGDWARGAGQRWGVGDVVFSGWAAVADMERSRRWMCVAEEERDVGAE 420
           PLNDCEEAALLRAAGDWARGAGQRWGVGDVVFSGWAAVADMERSRRWMCVAEEERDVGAE
Sbjct: 361 PLNDCEEAALLRAAGDWARGAGQRWGVGDVVFSGWAAVADMERSRRWMCVAEEERDVGAE 420

Query: 421 VDGXXXXXXXXXXXXXXXXGGATTVGVEVCTCRR 454
           VDG                GGATTVGVEVCTCRR
Sbjct: 421 VDGLVMDALVDELVADLALGGATTVGVEVCTCRR 454



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,724,790
Number of extensions: 372686
Number of successful extensions: 860
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 3
Length of query: 454
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 350
Effective length of database: 11,605,545
Effective search space: 4061940750
Effective search space used: 4061940750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)