BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0115100 Os03g0115100|AK121101
(1072 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0115100 Mevalonate and galactokinase family protein 2068 0.0
>Os03g0115100 Mevalonate and galactokinase family protein
Length = 1072
Score = 2068 bits (5358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1017/1072 (94%), Positives = 1017/1072 (94%)
Query: 1 MEPXXXXXXXXXXXXXXXXXXXVLRKAWCRLRLSARDPSRVPPWDAVVLTAASPEQAALY 60
MEP VLRKAWCRLRLSARDPSRVPPWDAVVLTAASPEQAALY
Sbjct: 1 MEPAERHRRRRRRAHTADEAAAVLRKAWCRLRLSARDPSRVPPWDAVVLTAASPEQAALY 60
Query: 61 DRQLARARRLGRFPASTAALAVPDPDAARIGSGAATLHAVASLVRHLIAQASKEEIAELL 120
DRQLARARRLGRFPASTAALAVPDPDAARIGSGAATLHAVASLVRHLIAQASKEEIAELL
Sbjct: 61 DRQLARARRLGRFPASTAALAVPDPDAARIGSGAATLHAVASLVRHLIAQASKEEIAELL 120
Query: 121 PEASDSSADDIPLSSVVRFMANKHVLLLHAGGDSKRVPWANPMGKAFLPLPYLAGDNPDG 180
PEASDSSADDIPLSSVVRFMANKHVLLLHAGGDSKRVPWANPMGKAFLPLPYLAGDNPDG
Sbjct: 121 PEASDSSADDIPLSSVVRFMANKHVLLLHAGGDSKRVPWANPMGKAFLPLPYLAGDNPDG 180
Query: 181 PVPLLFDHILAISSSARQAFKNQGGIFIMTGDVLPCFDASNLVLPDDAACIVTVPTTLDV 240
PVPLLFDHILAISSSARQAFKNQGGIFIMTGDVLPCFDASNLVLPDDAACIVTVPTTLDV
Sbjct: 181 PVPLLFDHILAISSSARQAFKNQGGIFIMTGDVLPCFDASNLVLPDDAACIVTVPTTLDV 240
Query: 241 AANHGVVVAAKDGTDGENYSLCLVDNLLQKPTVHELVEGQAIRDDGRALLDTGIISARGK 300
AANHGVVVAAKDGTDGENYSLCLVDNLLQKPTVHELVEGQAIRDDGRALLDTGIISARGK
Sbjct: 241 AANHGVVVAAKDGTDGENYSLCLVDNLLQKPTVHELVEGQAIRDDGRALLDTGIISARGK 300
Query: 301 AWQELVRLAYSSSHVMIKELITGRKEMSLYEDLVAAWVPSRHEWLRTRPFGMELIAALGK 360
AWQELVRLAYSSSHVMIKELITGRKEMSLYEDLVAAWVPSRHEWLRTRPFGMELIAALGK
Sbjct: 301 AWQELVRLAYSSSHVMIKELITGRKEMSLYEDLVAAWVPSRHEWLRTRPFGMELIAALGK 360
Query: 361 HRMFSFCSYDFSFLHFGTSAEVLDHLAGSYSGLVGRRHMSSIPETTACDIAATAVILSSK 420
HRMFSFCSYDFSFLHFGTSAEVLDHLAGSYSGLVGRRHMSSIPETTACDIAATAVILSSK
Sbjct: 361 HRMFSFCSYDFSFLHFGTSAEVLDHLAGSYSGLVGRRHMSSIPETTACDIAATAVILSSK 420
Query: 421 ISAGVSVGEDSLVYDSSLSGRIRIGSQCIVVGVNIHELHGNRSQIISTSSYFTLPDRHCL 480
ISAGVSVGEDSLVYDSSLSGRIRIGSQCIVVGVNIHELHGNRSQIISTSSYFTLPDRHCL
Sbjct: 421 ISAGVSVGEDSLVYDSSLSGRIRIGSQCIVVGVNIHELHGNRSQIISTSSYFTLPDRHCL 480
Query: 481 WEVPLVNSVERVMVYCGLHDNPKVSMKKDGTFCGKPWRNVLEHLKIQDTDLWSSTNEDNC 540
WEVPLVNSVERVMVYCGLHDNPKVSMKKDGTFCGKPWRNVLEHLKIQDTDLWSSTNEDNC
Sbjct: 481 WEVPLVNSVERVMVYCGLHDNPKVSMKKDGTFCGKPWRNVLEHLKIQDTDLWSSTNEDNC 540
Query: 541 LWNAKLFPVMSLPETLKVGMWLMGSTCDLDGKVASLWKESRRISLEELHRSIDYHQLCVN 600
LWNAKLFPVMSLPETLKVGMWLMGSTCDLDGKVASLWKESRRISLEELHRSIDYHQLCVN
Sbjct: 541 LWNAKLFPVMSLPETLKVGMWLMGSTCDLDGKVASLWKESRRISLEELHRSIDYHQLCVN 600
Query: 601 SSKHQADLATNIAKACMTYGLLGRNLFQLCEEMLQKENSCVEVCNELLSLCPSHGDQYSG 660
SSKHQADLATNIAKACMTYGLLGRNLFQLCEEMLQKENSCVEVCNELLSLCPSHGDQYSG
Sbjct: 601 SSKHQADLATNIAKACMTYGLLGRNLFQLCEEMLQKENSCVEVCNELLSLCPSHGDQYSG 660
Query: 661 VLPQSRRYQVKMDLLTASGDLSTAAIVEDKVWASIASETASAIKYGXXXXXXXXXXXXNG 720
VLPQSRRYQVKMDLLTASGDLSTAAIVEDKVWASIASETASAIKYG NG
Sbjct: 661 VLPQSRRYQVKMDLLTASGDLSTAAIVEDKVWASIASETASAIKYGSKEPSSDSKCSSNG 720
Query: 721 NLHPKKAIVELPVRVDFVGGWSDTPPWSLERPGCVLNMAIRLEGNLPVGAMIETTMDHLG 780
NLHPKKAIVELPVRVDFVGGWSDTPPWSLERPGCVLNMAIRLEGNLPVGAMIETTMDHLG
Sbjct: 721 NLHPKKAIVELPVRVDFVGGWSDTPPWSLERPGCVLNMAIRLEGNLPVGAMIETTMDHLG 780
Query: 781 VLIEDDAGRNVCIDDLSSITSPFKENDSFRLVKSALIVTGVLNHERLSKLGLNIRTWANV 840
VLIEDDAGRNVCIDDLSSITSPFKENDSFRLVKSALIVTGVLNHERLSKLGLNIRTWANV
Sbjct: 781 VLIEDDAGRNVCIDDLSSITSPFKENDSFRLVKSALIVTGVLNHERLSKLGLNIRTWANV 840
Query: 841 PRGSGLGTSSILAAAVVKGLFQLIEGDESDATVARAVLVVEQVMXXXXXXXXXXXXLYPG 900
PRGSGLGTSSILAAAVVKGLFQLIEGDESDATVARAVLVVEQVM LYPG
Sbjct: 841 PRGSGLGTSSILAAAVVKGLFQLIEGDESDATVARAVLVVEQVMGTGGGWQDQIGGLYPG 900
Query: 901 IKCTQSFPGQPLRLHVVPLLASPQLIQELQQRLLVVFTGQVRLAHRVLQKVVTRYLRRDS 960
IKCTQSFPGQPLRLHVVPLLASPQLIQELQQRLLVVFTGQVRLAHRVLQKVVTRYLRRDS
Sbjct: 901 IKCTQSFPGQPLRLHVVPLLASPQLIQELQQRLLVVFTGQVRLAHRVLQKVVTRYLRRDS 960
Query: 961 LLISSIKRLAELAKIGREALMNGEIDELGGIMSEAWRLHQELDPFCSNKLVDELFAFADP 1020
LLISSIKRLAELAKIGREALMNGEIDELGGIMSEAWRLHQELDPFCSNKLVDELFAFADP
Sbjct: 961 LLISSIKRLAELAKIGREALMNGEIDELGGIMSEAWRLHQELDPFCSNKLVDELFAFADP 1020
Query: 1021 YCCGYKLVXXXXXXXXXXXXKNLNSAKELRQALENSATFDVKVYNWNVAMTP 1072
YCCGYKLV KNLNSAKELRQALENSATFDVKVYNWNVAMTP
Sbjct: 1021 YCCGYKLVGAGGGGFALMLGKNLNSAKELRQALENSATFDVKVYNWNVAMTP 1072
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,521,253
Number of extensions: 1501487
Number of successful extensions: 3846
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3846
Number of HSP's successfully gapped: 1
Length of query: 1072
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 961
Effective length of database: 11,240,047
Effective search space: 10801685167
Effective search space used: 10801685167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)