BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0107600 Os03g0107600|AK071651
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0119300 Conserved hypothetical protein 439 e-124
Os03g0107600 Conserved hypothetical protein 439 e-124
>Os04g0119300 Conserved hypothetical protein
Length = 225
Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/225 (94%), Positives = 213/225 (94%)
Query: 1 MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTAGDTEASDKALVE 60
MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTAGDTEASDKALVE
Sbjct: 1 MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTAGDTEASDKALVE 60
Query: 61 RGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIP 120
RGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIP
Sbjct: 61 RGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIP 120
Query: 121 WVMLPLQIAYVTDXXXXXXXXXXXXCVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEV 180
WVMLPLQIAYVTD CVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEV
Sbjct: 121 WVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEV 180
Query: 181 MSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR 225
MSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR
Sbjct: 181 MSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR 225
>Os03g0107600 Conserved hypothetical protein
Length = 225
Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/225 (94%), Positives = 213/225 (94%)
Query: 1 MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTAGDTEASDKALVE 60
MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTAGDTEASDKALVE
Sbjct: 1 MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTAGDTEASDKALVE 60
Query: 61 RGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIP 120
RGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIP
Sbjct: 61 RGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIP 120
Query: 121 WVMLPLQIAYVTDXXXXXXXXXXXXCVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEV 180
WVMLPLQIAYVTD CVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEV
Sbjct: 121 WVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEV 180
Query: 181 MSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR 225
MSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR
Sbjct: 181 MSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR 225
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,514,266
Number of extensions: 281600
Number of successful extensions: 665
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)